Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 AC093043.1-201ENSMUST00000226700 898 ntBASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav6-3Q5R1E6 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 AC154266.1-201ENSMUST00000223190 503 ntBASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav6-3Q5R1E6 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trav6-3Q5R1E6 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trav6-3Q5R1E6 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trav6-3Q5R1E6 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
Trav6-3Q5R1E6 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
Trav6-3Q5R1E6 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav6-3Q5R1E6 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Gm45640-201ENSMUST00000210665 1896 ntBASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Gm45102-201ENSMUST00000207427 857 ntBASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trav6-3Q5R1E6 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 AC124603.1-201ENSMUST00000223843 308 ntBASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 AC126028.2-201ENSMUST00000228100 1833 ntBASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav6-3Q5R1E6 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav6-3Q5R1E6 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Rps24-207ENSMUST00000224568 714 ntBASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav6-3Q5R1E6 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 84.6 ms