Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.01■□□□□ 0.63
ABCA4P78363 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ABCA4P78363 BX005040.4-201ENST00000637145 1518 ntBASIC19.01■□□□□ 0.63
ABCA4P78363 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ABCA4P78363 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
ABCA4P78363 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ABCA4P78363 AC004812.2-201ENST00000611079 2094 ntBASIC19.01■□□□□ 0.63
ABCA4P78363 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ABCA4P78363 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ABCA4P78363 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19■□□□□ 0.63
ABCA4P78363 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
ABCA4P78363 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19■□□□□ 0.63
ABCA4P78363 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
ABCA4P78363 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ABCA4P78363 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
ABCA4P78363 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
ABCA4P78363 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19■□□□□ 0.63
ABCA4P78363 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19■□□□□ 0.63
ABCA4P78363 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19■□□□□ 0.63
ABCA4P78363 AC080038.1-201ENST00000611274 1154 ntBASIC19■□□□□ 0.63
ABCA4P78363 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
ABCA4P78363 ABCB10P4-201ENST00000566803 2184 ntBASIC19■□□□□ 0.63
ABCA4P78363 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19■□□□□ 0.63
ABCA4P78363 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA4P78363 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
ABCA4P78363 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ABCA4P78363 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.99■□□□□ 0.63
ABCA4P78363 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA4P78363 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ABCA4P78363 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA4P78363 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.99■□□□□ 0.63
ABCA4P78363 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA4P78363 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ABCA4P78363 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
ABCA4P78363 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
ABCA4P78363 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.99■□□□□ 0.63
ABCA4P78363 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
ABCA4P78363 AC079630.1-202ENST00000618127 1840 ntBASIC18.99■□□□□ 0.63
ABCA4P78363 AP004607.4-201ENST00000530158 1459 ntBASIC18.99■□□□□ 0.63
ABCA4P78363 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA4P78363 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA4P78363 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA4P78363 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.98■□□□□ 0.63
ABCA4P78363 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA4P78363 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA4P78363 AC104771.1-201ENST00000603335 964 ntBASIC18.98■□□□□ 0.63
ABCA4P78363 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA4P78363 LINC00543-201ENST00000567234 1845 ntBASIC18.98■□□□□ 0.63
ABCA4P78363 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
ABCA4P78363 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.98■□□□□ 0.63
ABCA4P78363 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA4P78363 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.98■□□□□ 0.63
ABCA4P78363 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ABCA4P78363 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.98■□□□□ 0.63
ABCA4P78363 AC004687.1-201ENST00000579003 1625 ntBASIC18.97■□□□□ 0.63
ABCA4P78363 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA4P78363 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA4P78363 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
ABCA4P78363 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA4P78363 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.97■□□□□ 0.63
ABCA4P78363 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.97■□□□□ 0.63
ABCA4P78363 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA4P78363 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ABCA4P78363 AC105233.4-201ENST00000642045 216 ntBASIC18.97■□□□□ 0.63
ABCA4P78363 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.97■□□□□ 0.63
ABCA4P78363 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ABCA4P78363 CREM-210ENST00000374721 2020 ntTSL 5 BASIC18.96■□□□□ 0.63
ABCA4P78363 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 TMEM191A-211ENST00000637163 1067 ntBASIC18.96■□□□□ 0.63
ABCA4P78363 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ABCA4P78363 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.95■□□□□ 0.62
ABCA4P78363 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ABCA4P78363 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
ABCA4P78363 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.95■□□□□ 0.62
ABCA4P78363 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.95■□□□□ 0.62
ABCA4P78363 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.94■□□□□ 0.62
ABCA4P78363 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.94■□□□□ 0.62
ABCA4P78363 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
ABCA4P78363 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 CROCCP5-201ENST00000436658 830 ntBASIC18.94■□□□□ 0.62
ABCA4P78363 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.94■□□□□ 0.62
ABCA4P78363 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ABCA4P78363 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms