Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Shisa8J3QNX5 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Shisa8J3QNX5 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Shisa8J3QNX5 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Shisa8J3QNX5 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Shisa8J3QNX5 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shisa8J3QNX5 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shisa8J3QNX5 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Shisa8J3QNX5 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Shisa8J3QNX5 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Shisa8J3QNX5 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Shisa8J3QNX5 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shisa8J3QNX5 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Gm43566-201ENSMUST00000196851 808 ntBASIC17.72■□□□□ 0.43
Shisa8J3QNX5 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shisa8J3QNX5 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms