Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV40A0A0B4J280 LTK-203ENST00000453182 2412 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 AC123595.1-201ENST00000440769 1046 ntBASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV40A0A0B4J280 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L2-201ENST00000561772 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 AC087239.1-201ENST00000622671 572 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L6-201ENST00000626483 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L1-201ENST00000627662 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L8-201ENST00000629013 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L3-201ENST00000630187 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L7-201ENST00000630678 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 DUX4L5-201ENST00000630834 1275 ntBASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV40A0A0B4J280 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 CCDC92B-201ENST00000575506 885 ntBASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.89■□□□□ 0.45
TRAV40A0A0B4J280 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 KRT18P5-201ENST00000436075 1291 ntBASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 AC068587.7-201ENST00000641602 218 ntBASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV40A0A0B4J280 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV40A0A0B4J280 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms