Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nkx2-4Q9EQM3 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nkx2-4Q9EQM3 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.32■□□□□ 0.84
Nkx2-4Q9EQM3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx2-4Q9EQM3 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Nkx2-4Q9EQM3 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nkx2-4Q9EQM3 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nkx2-4Q9EQM3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.3■□□□□ 0.84
Nkx2-4Q9EQM3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nkx2-4Q9EQM3 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nkx2-4Q9EQM3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nkx2-4Q9EQM3 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nkx2-4Q9EQM3 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Gm13534-201ENSMUST00000121169 513 ntBASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nkx2-4Q9EQM3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nkx2-4Q9EQM3 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nkx2-4Q9EQM3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Gm27275-201ENSMUST00000184318 272 ntBASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nkx2-4Q9EQM3 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms