Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CtcfQ61164 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CtcfQ61164 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CtcfQ61164 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CtcfQ61164 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.54■■□□□ 1.04
CtcfQ61164 Gm9959-201ENSMUST00000068277 390 ntBASIC21.54■■□□□ 1.04
CtcfQ61164 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CtcfQ61164 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CtcfQ61164 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CtcfQ61164 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CtcfQ61164 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CtcfQ61164 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CtcfQ61164 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CtcfQ61164 Gm15546-201ENSMUST00000122095 826 ntBASIC21.53■■□□□ 1.04
CtcfQ61164 Etf1-202ENSMUST00000180351 108 ntBASIC21.53■■□□□ 1.04
CtcfQ61164 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.53■■□□□ 1.04
CtcfQ61164 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CtcfQ61164 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CtcfQ61164 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CtcfQ61164 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CtcfQ61164 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
CtcfQ61164 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CtcfQ61164 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CtcfQ61164 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CtcfQ61164 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.52■■□□□ 1.04
CtcfQ61164 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CtcfQ61164 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CtcfQ61164 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.51■■□□□ 1.03
CtcfQ61164 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CtcfQ61164 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CtcfQ61164 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CtcfQ61164 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CtcfQ61164 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CtcfQ61164 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.5■■□□□ 1.03
CtcfQ61164 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CtcfQ61164 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CtcfQ61164 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CtcfQ61164 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CtcfQ61164 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CtcfQ61164 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.5■■□□□ 1.03
CtcfQ61164 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
CtcfQ61164 Gm9870-201ENSMUST00000063874 645 ntBASIC21.5■■□□□ 1.03
CtcfQ61164 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.5■■□□□ 1.03
CtcfQ61164 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
CtcfQ61164 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.5■■□□□ 1.03
CtcfQ61164 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CtcfQ61164 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.49■■□□□ 1.03
CtcfQ61164 Gm7417-201ENSMUST00000192950 473 ntBASIC21.49■■□□□ 1.03
CtcfQ61164 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.49■■□□□ 1.03
CtcfQ61164 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CtcfQ61164 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CtcfQ61164 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CtcfQ61164 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.48■■□□□ 1.03
CtcfQ61164 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.48■■□□□ 1.03
CtcfQ61164 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.48■■□□□ 1.03
CtcfQ61164 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CtcfQ61164 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.47■■□□□ 1.03
CtcfQ61164 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CtcfQ61164 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CtcfQ61164 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CtcfQ61164 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.46■■□□□ 1.03
CtcfQ61164 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CtcfQ61164 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CtcfQ61164 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CtcfQ61164 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.46■■□□□ 1.03
CtcfQ61164 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CtcfQ61164 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CtcfQ61164 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
CtcfQ61164 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.45■■□□□ 1.02
CtcfQ61164 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CtcfQ61164 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms