Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 AP005435.1-201ENST00000529293 1178 ntBASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAV40A0A0B4J280 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 AC027612.3-201ENST00000413684 1047 ntBASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 AL031602.1-201ENST00000633169 911 ntBASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV40A0A0B4J280 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 AC034268.1-201ENST00000441047 882 ntBASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
TRAV40A0A0B4J280 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
TRAV40A0A0B4J280 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.95■□□□□ 0.46
TRAV40A0A0B4J280 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 AC093323.1-202ENST00000635031 2045 ntBASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRAV40A0A0B4J280 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 AC105233.4-201ENST00000642045 216 ntBASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV40A0A0B4J280 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms