Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.2■□□□□ 0.02
ALMS1Q8TCU4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 DUX4L4-201ENST00000566884 1269 ntBASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ALMS1Q8TCU4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 PRORSD1P-201ENST00000295112 541 ntBASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.18■□□□□ 0.02
ALMS1Q8TCU4 RPS2P52-201ENST00000469610 820 ntBASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 AL121832.2-201ENST00000610979 668 ntBASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC15.17■□□□□ 0.02
ALMS1Q8TCU4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 SLC7A5P1-201ENST00000568957 537 ntBASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 HLA-L-211ENST00000482052 1765 ntBASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
ALMS1Q8TCU4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 DUX4L16-201ENST00000555130 1264 ntBASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 CNN2P6-201ENST00000439038 900 ntBASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 AC073210.2-201ENST00000430369 194 ntBASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 AC231657.2-201ENST00000624556 255 ntBASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ALMS1Q8TCU4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 BX005040.4-201ENST00000637145 1518 ntBASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ALMS1Q8TCU4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms