Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 AC004687.1-201ENST00000579003 1625 ntBASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SCUBE3Q8IX30 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 AC133637.1-201ENST00000624115 1537 ntBASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SCUBE3Q8IX30 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 AL139246.5-201ENST00000606645 996 ntBASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 AL136162.1-201ENST00000607711 1078 ntBASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 AC110285.6-201ENST00000617652 491 ntBASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SCUBE3Q8IX30 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 AL138724.1-201ENST00000606771 1088 ntBASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SCUBE3Q8IX30 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 PBX2P1-201ENST00000493219 1291 ntBASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 AC024257.2-201ENST00000549699 147 ntBASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.28■■□□□ 1.32
SCUBE3Q8IX30 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 AC011298.3-201ENST00000615796 283 ntBASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
SCUBE3Q8IX30 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.31
SCUBE3Q8IX30 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 AC135279.3-201ENST00000610945 1311 ntBASIC23.26■■□□□ 1.31
SCUBE3Q8IX30 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.25■■□□□ 1.31
SCUBE3Q8IX30 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 AC106739.1-201ENST00000617035 715 ntBASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 AC136469.2-201ENST00000623944 1028 ntBASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SCUBE3Q8IX30 C1orf229-201ENST00000623686 2258 ntBASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms