Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC31.28■■■□□ 2.6
Col17a1Q07563 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
Col17a1Q07563 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col17a1Q07563 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col17a1Q07563 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC31.28■■■□□ 2.6
Col17a1Q07563 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
Col17a1Q07563 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Col17a1Q07563 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Col17a1Q07563 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Col17a1Q07563 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC31.27■■■□□ 2.6
Col17a1Q07563 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Col17a1Q07563 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.6
Col17a1Q07563 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
Col17a1Q07563 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
Col17a1Q07563 Mir5122-201ENSMUST00000175004 89 ntBASIC31.26■■■□□ 2.59
Col17a1Q07563 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col17a1Q07563 Gm37563-201ENSMUST00000192580 1513 ntBASIC31.26■■■□□ 2.59
Col17a1Q07563 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Col17a1Q07563 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col17a1Q07563 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Col17a1Q07563 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC31.25■■■□□ 2.59
Col17a1Q07563 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC31.25■■■□□ 2.59
Col17a1Q07563 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Col17a1Q07563 Gm14464-201ENSMUST00000119658 1254 ntBASIC31.25■■■□□ 2.59
Col17a1Q07563 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Col17a1Q07563 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Col17a1Q07563 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Col17a1Q07563 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Col17a1Q07563 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Col17a1Q07563 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Col17a1Q07563 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Col17a1Q07563 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
Col17a1Q07563 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC31.23■■■□□ 2.59
Col17a1Q07563 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Col17a1Q07563 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC31.22■■■□□ 2.59
Col17a1Q07563 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col17a1Q07563 Gm6659-201ENSMUST00000174752 547 ntBASIC31.22■■■□□ 2.59
Col17a1Q07563 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col17a1Q07563 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col17a1Q07563 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
Col17a1Q07563 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
Col17a1Q07563 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Col17a1Q07563 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Col17a1Q07563 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Col17a1Q07563 Gm38205-201ENSMUST00000192243 258 ntBASIC31.21■■■□□ 2.59
Col17a1Q07563 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
Col17a1Q07563 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC31.21■■■□□ 2.59
Col17a1Q07563 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
Col17a1Q07563 Gm8668-201ENSMUST00000120559 1447 ntBASIC31.2■■■□□ 2.59
Col17a1Q07563 Dio3-201ENSMUST00000097228 1449 ntBASIC31.2■■■□□ 2.59
Col17a1Q07563 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Col17a1Q07563 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC31.19■■■□□ 2.58
Col17a1Q07563 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC31.19■■■□□ 2.58
Col17a1Q07563 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Col17a1Q07563 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Col17a1Q07563 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
Col17a1Q07563 Gm10167-201ENSMUST00000150411 1479 ntBASIC31.18■■■□□ 2.58
Col17a1Q07563 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Col17a1Q07563 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Col17a1Q07563 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Col17a1Q07563 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC31.18■■■□□ 2.58
Col17a1Q07563 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Col17a1Q07563 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC31.17■■■□□ 2.58
Col17a1Q07563 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
Col17a1Q07563 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Col17a1Q07563 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col17a1Q07563 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col17a1Q07563 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col17a1Q07563 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col17a1Q07563 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC31.16■■■□□ 2.58
Col17a1Q07563 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col17a1Q07563 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col17a1Q07563 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
Col17a1Q07563 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
Col17a1Q07563 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC31.15■■■□□ 2.58
Col17a1Q07563 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col17a1Q07563 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Col17a1Q07563 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Col17a1Q07563 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Col17a1Q07563 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Col17a1Q07563 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Col17a1Q07563 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
Col17a1Q07563 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC31.14■■■□□ 2.57
Col17a1Q07563 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Col17a1Q07563 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Col17a1Q07563 Alkbh1-212ENSMUST00000185301 408 ntBASIC31.13■■■□□ 2.57
Col17a1Q07563 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
Col17a1Q07563 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Col17a1Q07563 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC31.13■■■□□ 2.57
Col17a1Q07563 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col17a1Q07563 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col17a1Q07563 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Col17a1Q07563 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC31.12■■■□□ 2.57
Col17a1Q07563 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Col17a1Q07563 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Col17a1Q07563 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC31.11■■■□□ 2.57
Col17a1Q07563 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Col17a1Q07563 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Col17a1Q07563 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC31.11■■■□□ 2.57
Col17a1Q07563 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms