Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.14■□□□□ 0.65
ABCA4P78363 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA4P78363 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA4P78363 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCA4P78363 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA4P78363 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ABCA4P78363 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA4P78363 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCA4P78363 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCA4P78363 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCA4P78363 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCA4P78363 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA4P78363 AC138932.3-201ENST00000567634 1902 ntBASIC19.13■□□□□ 0.65
ABCA4P78363 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
ABCA4P78363 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA4P78363 OR2I1P-207ENST00000453522 948 ntBASIC19.13■□□□□ 0.65
ABCA4P78363 TPRG1LP1-201ENST00000598702 760 ntBASIC19.13■□□□□ 0.65
ABCA4P78363 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCA4P78363 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
ABCA4P78363 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCA4P78363 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCA4P78363 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
ABCA4P78363 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA4P78363 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
ABCA4P78363 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ABCA4P78363 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
ABCA4P78363 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ABCA4P78363 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.12■□□□□ 0.65
ABCA4P78363 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.12■□□□□ 0.65
ABCA4P78363 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA4P78363 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.12■□□□□ 0.65
ABCA4P78363 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ABCA4P78363 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 LINC01529-204ENST00000636474 1715 ntBASIC19.11■□□□□ 0.65
ABCA4P78363 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.11■□□□□ 0.65
ABCA4P78363 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.11■□□□□ 0.65
ABCA4P78363 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ABCA4P78363 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.11■□□□□ 0.65
ABCA4P78363 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.11■□□□□ 0.65
ABCA4P78363 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ABCA4P78363 AC020928.2-201ENST00000588717 2197 ntBASIC19.1■□□□□ 0.65
ABCA4P78363 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA4P78363 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
ABCA4P78363 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.1■□□□□ 0.65
ABCA4P78363 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA4P78363 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA4P78363 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA4P78363 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.1■□□□□ 0.65
ABCA4P78363 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.1■□□□□ 0.65
ABCA4P78363 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ABCA4P78363 AP003733.4-201ENST00000623785 1697 ntBASIC19.09■□□□□ 0.65
ABCA4P78363 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.09■□□□□ 0.65
ABCA4P78363 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.09■□□□□ 0.65
ABCA4P78363 CDCA4P2-201ENST00000441182 718 ntBASIC19.09■□□□□ 0.65
ABCA4P78363 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ABCA4P78363 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms