Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAV40A0A0B4J280 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.04■□□□□ 0.48
TRAV40A0A0B4J280 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV40A0A0B4J280 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 MIR572-201ENST00000384983 95 ntBASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 AL162430.1-201ENST00000480705 870 ntBASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 AC012414.1-201ENST00000556676 535 ntBASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 MIR6084-201ENST00000622012 110 ntBASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 AL358852.1-201ENST00000623174 1268 ntBASIC18.02■□□□□ 0.48
TRAV40A0A0B4J280 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAV40A0A0B4J280 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 YBX1P1-201ENST00000445822 960 ntBASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 AL353803.4-201ENST00000565882 1934 ntBASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 AC004687.1-201ENST00000579003 1625 ntBASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV40A0A0B4J280 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 H19-210ENST00000439725 1929 ntTSL 2 BASIC18■□□□□ 0.47
TRAV40A0A0B4J280 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 AL354811.1-201ENST00000610286 706 ntBASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV40A0A0B4J280 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms