Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Gm7290-201ENSMUST00000104990 617 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Gm12918-201ENSMUST00000120234 636 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Gm15710-201ENSMUST00000121821 636 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Gm5075-201ENSMUST00000196916 622 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nkx2-4Q9EQM3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nkx2-4Q9EQM3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nkx2-4Q9EQM3 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.5■□□□□ 0.87
Nkx2-4Q9EQM3 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nkx2-4Q9EQM3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nkx2-4Q9EQM3 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Gm37856-201ENSMUST00000191634 999 ntBASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nkx2-4Q9EQM3 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Nkx2-4Q9EQM3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nkx2-4Q9EQM3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nkx2-4Q9EQM3 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 AC153962.1-201ENSMUST00000218530 1948 ntBASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nkx2-4Q9EQM3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx2-4Q9EQM3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx2-4Q9EQM3 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx2-4Q9EQM3 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nkx2-4Q9EQM3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms