Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Gm40848-201ENSMUST00000221998 324 ntBASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ccdc3Q9D6Y1 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Gm42569-201ENSMUST00000200539 472 ntBASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ccdc3Q9D6Y1 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ccdc3Q9D6Y1 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ccdc3Q9D6Y1 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ccdc3Q9D6Y1 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Ccdc3Q9D6Y1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Gm26571-201ENSMUST00000181399 666 ntBASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Ccdc3Q9D6Y1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Gm27405-201ENSMUST00000184201 112 ntBASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Gm42642-201ENSMUST00000200683 355 ntBASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc3Q9D6Y1 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc3Q9D6Y1 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc3Q9D6Y1 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms