Protein–RNA interactions for Protein: Q80TE0

Rpap1, RNA polymerase II-associated protein 1, mousemouse

Predictions only

Length 1,409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap1Q80TE0 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Rpap1Q80TE0 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Rpap1Q80TE0 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
Rpap1Q80TE0 Gm13148-201ENSMUST00000118892 745 ntBASIC31.21■■■□□ 2.59
Rpap1Q80TE0 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
Rpap1Q80TE0 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC31.2■■■□□ 2.59
Rpap1Q80TE0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Rpap1Q80TE0 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Rpap1Q80TE0 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.58
Rpap1Q80TE0 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Rpap1Q80TE0 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
Rpap1Q80TE0 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Rpap1Q80TE0 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Rpap1Q80TE0 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Rpap1Q80TE0 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Rpap1Q80TE0 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Gm17641-201ENSMUST00000166328 2350 ntBASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Rpap1Q80TE0 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Rpap1Q80TE0 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Rpap1Q80TE0 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC31.17■■■□□ 2.58
Rpap1Q80TE0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Rpap1Q80TE0 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Rpap1Q80TE0 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC31.16■■■□□ 2.58
Rpap1Q80TE0 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Rpap1Q80TE0 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
Rpap1Q80TE0 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Rpap1Q80TE0 Gm13146-201ENSMUST00000118508 780 ntBASIC31.14■■■□□ 2.58
Rpap1Q80TE0 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Rpap1Q80TE0 Gm43859-201ENSMUST00000200075 1412 ntBASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Gm20760-201ENSMUST00000179197 648 ntBASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Gm10252-201ENSMUST00000209541 832 ntBASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Rpap1Q80TE0 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Rpap1Q80TE0 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Rpap1Q80TE0 CT030146.1-201ENSMUST00000220919 217 ntBASIC31.12■■■□□ 2.57
Rpap1Q80TE0 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Rpap1Q80TE0 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Gm22240-201ENSMUST00000175225 82 ntBASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Rpap1Q80TE0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Rpap1Q80TE0 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Rpap1Q80TE0 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC31.08■■■□□ 2.57
Rpap1Q80TE0 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Rpap1Q80TE0 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
Rpap1Q80TE0 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Rpap1Q80TE0 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Rpap1Q80TE0 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC31.08■■■□□ 2.57
Rpap1Q80TE0 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC31.07■■■□□ 2.57
Rpap1Q80TE0 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.57
Rpap1Q80TE0 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Rpap1Q80TE0 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rpap1Q80TE0 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rpap1Q80TE0 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rpap1Q80TE0 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Rpap1Q80TE0 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Rpap1Q80TE0 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Rpap1Q80TE0 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC31.06■■■□□ 2.56
Rpap1Q80TE0 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
Rpap1Q80TE0 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC31.05■■■□□ 2.56
Rpap1Q80TE0 CT010467.1-202ENSMUST00000205406 714 ntBASIC31.05■■■□□ 2.56
Rpap1Q80TE0 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Gm3807-201ENSMUST00000193520 1168 ntBASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Rpap1Q80TE0 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
Rpap1Q80TE0 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Rpap1Q80TE0 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC31.03■■■□□ 2.56
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms