Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CtcfQ61164 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CtcfQ61164 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CtcfQ61164 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CtcfQ61164 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.74■■□□□ 1.07
CtcfQ61164 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.74■■□□□ 1.07
CtcfQ61164 Gm40881-201ENSMUST00000223397 166 ntBASIC21.74■■□□□ 1.07
CtcfQ61164 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CtcfQ61164 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CtcfQ61164 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CtcfQ61164 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
CtcfQ61164 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CtcfQ61164 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CtcfQ61164 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CtcfQ61164 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CtcfQ61164 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CtcfQ61164 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.72■■□□□ 1.07
CtcfQ61164 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CtcfQ61164 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CtcfQ61164 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CtcfQ61164 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.71■■□□□ 1.07
CtcfQ61164 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.71■■□□□ 1.07
CtcfQ61164 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CtcfQ61164 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CtcfQ61164 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CtcfQ61164 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CtcfQ61164 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CtcfQ61164 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
CtcfQ61164 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.7■■□□□ 1.06
CtcfQ61164 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.7■■□□□ 1.06
CtcfQ61164 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CtcfQ61164 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
CtcfQ61164 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.69■■□□□ 1.06
CtcfQ61164 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CtcfQ61164 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CtcfQ61164 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CtcfQ61164 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CtcfQ61164 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CtcfQ61164 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.68■■□□□ 1.06
CtcfQ61164 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.68■■□□□ 1.06
CtcfQ61164 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.68■■□□□ 1.06
CtcfQ61164 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CtcfQ61164 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CtcfQ61164 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
CtcfQ61164 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CtcfQ61164 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.67■■□□□ 1.06
CtcfQ61164 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.67■■□□□ 1.06
CtcfQ61164 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CtcfQ61164 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CtcfQ61164 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CtcfQ61164 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CtcfQ61164 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.66■■□□□ 1.06
CtcfQ61164 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.66■■□□□ 1.06
CtcfQ61164 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CtcfQ61164 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.66■■□□□ 1.06
CtcfQ61164 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
CtcfQ61164 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CtcfQ61164 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CtcfQ61164 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CtcfQ61164 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Gm7143-201ENSMUST00000222811 859 ntBASIC21.65■■□□□ 1.06
CtcfQ61164 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CtcfQ61164 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CtcfQ61164 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.64■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 103.3 ms