Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ABCA4P78363 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.2■□□□□ 0.66
ABCA4P78363 NTF6G-201ENST00000591094 616 ntBASIC19.2■□□□□ 0.66
ABCA4P78363 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA4P78363 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA4P78363 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ABCA4P78363 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA4P78363 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.2■□□□□ 0.66
ABCA4P78363 HLA-L-209ENST00000420110 1011 ntBASIC19.2■□□□□ 0.66
ABCA4P78363 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA4P78363 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
ABCA4P78363 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCA4P78363 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA4P78363 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.19■□□□□ 0.66
ABCA4P78363 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.19■□□□□ 0.66
ABCA4P78363 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ABCA4P78363 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCA4P78363 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.18■□□□□ 0.66
ABCA4P78363 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ABCA4P78363 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.18■□□□□ 0.66
ABCA4P78363 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ABCA4P78363 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
ABCA4P78363 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
ABCA4P78363 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCA4P78363 AC016769.1-201ENST00000409132 1010 ntBASIC19.18■□□□□ 0.66
ABCA4P78363 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.18■□□□□ 0.66
ABCA4P78363 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.18■□□□□ 0.66
ABCA4P78363 AL499627.2-201ENST00000606283 725 ntBASIC19.18■□□□□ 0.66
ABCA4P78363 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ABCA4P78363 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCA4P78363 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCA4P78363 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ABCA4P78363 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ABCA4P78363 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.17■□□□□ 0.66
ABCA4P78363 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.17■□□□□ 0.66
ABCA4P78363 RAP2CP1-201ENST00000605103 478 ntBASIC19.17■□□□□ 0.66
ABCA4P78363 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.17■□□□□ 0.66
ABCA4P78363 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCA4P78363 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.16■□□□□ 0.66
ABCA4P78363 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.16■□□□□ 0.66
ABCA4P78363 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 KRT18P61-201ENST00000585825 1298 ntBASIC19.16■□□□□ 0.66
ABCA4P78363 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.16■□□□□ 0.66
ABCA4P78363 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ABCA4P78363 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCA4P78363 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.16■□□□□ 0.66
ABCA4P78363 AC066615.1-201ENST00000640911 628 ntBASIC19.16■□□□□ 0.66
ABCA4P78363 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCA4P78363 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ABCA4P78363 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ABCA4P78363 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ABCA4P78363 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ABCA4P78363 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA4P78363 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.15■□□□□ 0.66
ABCA4P78363 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.15■□□□□ 0.66
ABCA4P78363 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.15■□□□□ 0.66
ABCA4P78363 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCA4P78363 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
ABCA4P78363 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCA4P78363 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
ABCA4P78363 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ABCA4P78363 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ABCA4P78363 AC144652.1-201ENST00000609974 1624 ntBASIC19.14■□□□□ 0.65
ABCA4P78363 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms