Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 AC097381.1-201ENST00000429019 1296 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 OR2I1P-207ENST00000453522 948 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 IGHV3-19-201ENST00000521488 291 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 AC010525.1-201ENST00000585559 441 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 MIR6821-201ENST00000617625 74 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
TRAV40A0A0B4J280 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 AC079630.1-202ENST00000618127 1840 ntBASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRAV40A0A0B4J280 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 AC087623.3-201ENST00000607047 1098 ntBASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRAV40A0A0B4J280 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.08■□□□□ 0.49
TRAV40A0A0B4J280 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV40A0A0B4J280 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV40A0A0B4J280 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRAV40A0A0B4J280 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRAV40A0A0B4J280 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 AC104564.3-201ENST00000582367 638 ntBASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 AC092666.2-201ENST00000613287 246 ntBASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TRAV40A0A0B4J280 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAV40A0A0B4J280 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms