Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 DUSP8P3-201ENST00000399571 1760 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 AC024257.2-201ENST00000549699 147 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 pRNA.6-201ENST00000610482 90 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 pRNA.5-201ENST00000612139 90 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 pRNA.11-201ENST00000618423 90 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 pRNA.13-201ENST00000619112 90 ntBASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN16Q9Y5I7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 AL136162.1-201ENST00000607711 1078 ntBASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 AC106739.1-201ENST00000617035 715 ntBASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN16Q9Y5I7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 AC011298.3-201ENST00000615796 283 ntBASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN16Q9Y5I7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 AC135279.3-201ENST00000610945 1311 ntBASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 AL031432.3-201ENST00000607698 485 ntBASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN16Q9Y5I7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 MIR638-201ENST00000385237 100 ntBASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLDN16Q9Y5I7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 PBX2P1-201ENST00000493219 1291 ntBASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 AC136469.2-201ENST00000623944 1028 ntBASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLDN16Q9Y5I7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.83■□□□□ 0.92
CLDN16Q9Y5I7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.82■□□□□ 0.92
CLDN16Q9Y5I7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLDN16Q9Y5I7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 315.1 ms