Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Nkx2-4Q9EQM3 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nkx2-4Q9EQM3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nkx2-4Q9EQM3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Nkx2-4Q9EQM3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Nkx2-4Q9EQM3 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.64■□□□□ 0.89
Nkx2-4Q9EQM3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx2-4Q9EQM3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx2-4Q9EQM3 Mir6236-201ENSMUST00000184437 123 ntBASIC20.64■□□□□ 0.89
Nkx2-4Q9EQM3 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Nkx2-4Q9EQM3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Gm13148-201ENSMUST00000118892 745 ntBASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nkx2-4Q9EQM3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nkx2-4Q9EQM3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nkx2-4Q9EQM3 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Gm10812-201ENSMUST00000099864 546 ntBASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nkx2-4Q9EQM3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nkx2-4Q9EQM3 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Nkx2-4Q9EQM3 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nkx2-4Q9EQM3 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 Gm6365-201ENSMUST00000054711 744 ntBASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Nkx2-4Q9EQM3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Mir6982-201ENSMUST00000184354 68 ntBASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Gm20049-201ENSMUST00000219950 730 ntBASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nkx2-4Q9EQM3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Gm7977-201ENSMUST00000193787 748 ntBASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Nkx2-4Q9EQM3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Nkx2-4Q9EQM3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms