Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Clp1Q99LI9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clp1Q99LI9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clp1Q99LI9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clp1Q99LI9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.22■□□□□ 0.99
Clp1Q99LI9 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.21■□□□□ 0.99
Clp1Q99LI9 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clp1Q99LI9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clp1Q99LI9 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Gm12441-201ENSMUST00000121806 588 ntBASIC21.19■□□□□ 0.98
Clp1Q99LI9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.19■□□□□ 0.98
Clp1Q99LI9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.19■□□□□ 0.98
Clp1Q99LI9 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clp1Q99LI9 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clp1Q99LI9 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clp1Q99LI9 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Clp1Q99LI9 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clp1Q99LI9 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clp1Q99LI9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.17■□□□□ 0.98
Clp1Q99LI9 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.17■□□□□ 0.98
Clp1Q99LI9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Clp1Q99LI9 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Clp1Q99LI9 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.15■□□□□ 0.98
Clp1Q99LI9 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Clp1Q99LI9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clp1Q99LI9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Clp1Q99LI9 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.14■□□□□ 0.98
Clp1Q99LI9 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Clp1Q99LI9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.14■□□□□ 0.97
Clp1Q99LI9 Nespas-201ENSMUST00000143738 1083 ntBASIC21.14■□□□□ 0.97
Clp1Q99LI9 Mir5133-201ENSMUST00000174955 77 ntBASIC21.14■□□□□ 0.97
Clp1Q99LI9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clp1Q99LI9 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Clp1Q99LI9 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.13■□□□□ 0.97
Clp1Q99LI9 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clp1Q99LI9 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC21.13■□□□□ 0.97
Clp1Q99LI9 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.13■□□□□ 0.97
Clp1Q99LI9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Clp1Q99LI9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Clp1Q99LI9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Clp1Q99LI9 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.11■□□□□ 0.97
Clp1Q99LI9 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Clp1Q99LI9 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Clp1Q99LI9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.11■□□□□ 0.97
Clp1Q99LI9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Clp1Q99LI9 Gm4968-201ENSMUST00000071458 858 ntBASIC21.11■□□□□ 0.97
Clp1Q99LI9 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clp1Q99LI9 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms