Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Mir6236-201ENSMUST00000184437 123 ntBASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav6-3Q5R1E6 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trav6-3Q5R1E6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Gm43530-201ENSMUST00000195920 274 ntBASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav6-3Q5R1E6 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav6-3Q5R1E6 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC15.96■□□□□ 0.15
Trav6-3Q5R1E6 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav6-3Q5R1E6 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav6-3Q5R1E6 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav6-3Q5R1E6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Gm43545-201ENSMUST00000196765 2779 ntBASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Gm9870-201ENSMUST00000063874 645 ntBASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trav6-3Q5R1E6 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Gm6802-201ENSMUST00000167843 1983 ntBASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav6-3Q5R1E6 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Gm10657-201ENSMUST00000193528 1031 ntBASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav6-3Q5R1E6 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 148.1 ms