Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.29■□□□□ 0.68
ABCA4P78363 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA4P78363 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA4P78363 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA4P78363 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
ABCA4P78363 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA4P78363 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA4P78363 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA4P78363 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
ABCA4P78363 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.28■□□□□ 0.68
ABCA4P78363 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA4P78363 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA4P78363 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.27■□□□□ 0.68
ABCA4P78363 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ABCA4P78363 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
ABCA4P78363 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
ABCA4P78363 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA4P78363 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.27■□□□□ 0.68
ABCA4P78363 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA4P78363 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.27■□□□□ 0.67
ABCA4P78363 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.27■□□□□ 0.67
ABCA4P78363 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ABCA4P78363 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
ABCA4P78363 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.26■□□□□ 0.67
ABCA4P78363 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.26■□□□□ 0.67
ABCA4P78363 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.26■□□□□ 0.67
ABCA4P78363 AP005435.1-201ENST00000529293 1178 ntBASIC19.26■□□□□ 0.67
ABCA4P78363 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.26■□□□□ 0.67
ABCA4P78363 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
ABCA4P78363 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA4P78363 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.25■□□□□ 0.67
ABCA4P78363 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
ABCA4P78363 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA4P78363 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
ABCA4P78363 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.24■□□□□ 0.67
ABCA4P78363 AL354811.1-201ENST00000610286 706 ntBASIC19.24■□□□□ 0.67
ABCA4P78363 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 FP325331.1-202ENST00000623531 1380 ntBASIC19.24■□□□□ 0.67
ABCA4P78363 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.24■□□□□ 0.67
ABCA4P78363 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA4P78363 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA4P78363 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.23■□□□□ 0.67
ABCA4P78363 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA4P78363 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
ABCA4P78363 MIR6084-201ENST00000622012 110 ntBASIC19.23■□□□□ 0.67
ABCA4P78363 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA4P78363 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.23■□□□□ 0.67
ABCA4P78363 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA4P78363 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA4P78363 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ABCA4P78363 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.22■□□□□ 0.67
ABCA4P78363 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCA4P78363 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ABCA4P78363 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
ABCA4P78363 ABHD17AP1-201ENST00000358206 933 ntBASIC19.22■□□□□ 0.67
ABCA4P78363 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA4P78363 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA4P78363 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
ABCA4P78363 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA4P78363 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ABCA4P78363 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.21■□□□□ 0.67
ABCA4P78363 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
ABCA4P78363 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA4P78363 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms