Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 MIR5787-201ENST00000611784 55 ntBASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TRAV40A0A0B4J280 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 AC004812.2-201ENST00000611079 2094 ntBASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 FP325331.1-202ENST00000623531 1380 ntBASIC18.17■□□□□ 0.5
TRAV40A0A0B4J280 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 LINC01529-204ENST00000636474 1715 ntBASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 DUX4L4-201ENST00000566884 1269 ntBASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV40A0A0B4J280 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 TSPY26P-201ENST00000476365 1326 ntBASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV40A0A0B4J280 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
TRAV40A0A0B4J280 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 AL499627.2-201ENST00000606283 725 ntBASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 ABCB10P4-201ENST00000566803 2184 ntBASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV40A0A0B4J280 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV40A0A0B4J280 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV40A0A0B4J280 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms