Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 SERBP1P1-201ENST00000396021 1160 ntBASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 AC096631.2-201ENST00000436136 790 ntBASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 LINC01529-204ENST00000636474 1715 ntBASIC20.95■□□□□ 0.94
CLDN16Q9Y5I7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 AC009086.3-201ENST00000623486 1008 ntBASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 AL353803.4-201ENST00000565882 1934 ntBASIC20.94■□□□□ 0.94
CLDN16Q9Y5I7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 UNC93B3-201ENST00000308076 687 ntBASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLDN16Q9Y5I7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 MIR3181-201ENST00000578512 73 ntBASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 AC092171.4-201ENST00000609130 632 ntBASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN16Q9Y5I7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 DUX4L19-201ENST00000557448 1267 ntBASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 AL499627.2-201ENST00000606283 725 ntBASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 SYT6-210ENST00000641643 1587 ntBASIC20.91■□□□□ 0.94
CLDN16Q9Y5I7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 AL139246.5-201ENST00000606645 996 ntBASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN16Q9Y5I7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN16Q9Y5I7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN16Q9Y5I7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
CLDN16Q9Y5I7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN16Q9Y5I7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 AL138724.1-201ENST00000606771 1088 ntBASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN16Q9Y5I7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms