Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HDDC3Q8N4P3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HDDC3Q8N4P3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.54■■□□□ 1.2
HDDC3Q8N4P3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 RARRES2P11-201ENST00000635158 484 ntBASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
HDDC3Q8N4P3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
HDDC3Q8N4P3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.52■■□□□ 1.19
HDDC3Q8N4P3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
HDDC3Q8N4P3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 AC034268.1-201ENST00000441047 882 ntBASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 LINC01124-201ENST00000409786 2117 ntBASIC22.51■■□□□ 1.19
HDDC3Q8N4P3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 AL137784.2-201ENST00000607332 1000 ntBASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HDDC3Q8N4P3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 AC126544.1-201ENST00000580842 1059 ntBASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 FP325331.1-202ENST00000623531 1380 ntBASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
HDDC3Q8N4P3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HDDC3Q8N4P3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HDDC3Q8N4P3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.48■■□□□ 1.19
HDDC3Q8N4P3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
HDDC3Q8N4P3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.48■■□□□ 1.19
HDDC3Q8N4P3 LINC00543-201ENST00000567234 1845 ntBASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 AC133637.1-201ENST00000624115 1537 ntBASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HDDC3Q8N4P3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 SLC47A1P1-202ENST00000449666 945 ntBASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HDDC3Q8N4P3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.19
HDDC3Q8N4P3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 DUX4L4-201ENST00000566884 1269 ntBASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HDDC3Q8N4P3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms