Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Gm10399-202ENSMUST00000202768 748 ntBASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sh3rf1Q69ZI1 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sh3rf1Q69ZI1 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sh3rf1Q69ZI1 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Gm21956-201ENSMUST00000179946 522 ntBASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Sh3rf1Q69ZI1 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sh3rf1Q69ZI1 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sh3rf1Q69ZI1 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
Sh3rf1Q69ZI1 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sh3rf1Q69ZI1 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sh3rf1Q69ZI1 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sh3rf1Q69ZI1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Sh3rf1Q69ZI1 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.18■□□□□ 0.82
Sh3rf1Q69ZI1 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.17■□□□□ 0.82
Sh3rf1Q69ZI1 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sh3rf1Q69ZI1 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms