Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CtcfQ61164 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC21.99■■□□□ 1.11
CtcfQ61164 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CtcfQ61164 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CtcfQ61164 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CtcfQ61164 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CtcfQ61164 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CtcfQ61164 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CtcfQ61164 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.97■■□□□ 1.11
CtcfQ61164 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CtcfQ61164 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CtcfQ61164 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.97■■□□□ 1.11
CtcfQ61164 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.97■■□□□ 1.11
CtcfQ61164 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
CtcfQ61164 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.97■■□□□ 1.11
CtcfQ61164 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.97■■□□□ 1.11
CtcfQ61164 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CtcfQ61164 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CtcfQ61164 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.96■■□□□ 1.11
CtcfQ61164 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CtcfQ61164 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.96■■□□□ 1.11
CtcfQ61164 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CtcfQ61164 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CtcfQ61164 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CtcfQ61164 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.95■■□□□ 1.1
CtcfQ61164 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.95■■□□□ 1.1
CtcfQ61164 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CtcfQ61164 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.95■■□□□ 1.1
CtcfQ61164 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.95■■□□□ 1.1
CtcfQ61164 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.95■■□□□ 1.1
CtcfQ61164 Gm10232-201ENSMUST00000089221 720 ntBASIC21.94■■□□□ 1.1
CtcfQ61164 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CtcfQ61164 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CtcfQ61164 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CtcfQ61164 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CtcfQ61164 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CtcfQ61164 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.92■■□□□ 1.1
CtcfQ61164 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CtcfQ61164 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CtcfQ61164 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.92■■□□□ 1.1
CtcfQ61164 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.92■■□□□ 1.1
CtcfQ61164 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CtcfQ61164 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CtcfQ61164 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CtcfQ61164 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CtcfQ61164 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CtcfQ61164 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CtcfQ61164 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CtcfQ61164 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.91■■□□□ 1.1
CtcfQ61164 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CtcfQ61164 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CtcfQ61164 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CtcfQ61164 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.9■■□□□ 1.1
CtcfQ61164 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
CtcfQ61164 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CtcfQ61164 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CtcfQ61164 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CtcfQ61164 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CtcfQ61164 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CtcfQ61164 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CtcfQ61164 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CtcfQ61164 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CtcfQ61164 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
CtcfQ61164 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
CtcfQ61164 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CtcfQ61164 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CtcfQ61164 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CtcfQ61164 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 80.5 ms