Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Col17a1Q07563 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Col17a1Q07563 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Col17a1Q07563 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Gm10231-201ENSMUST00000181584 441 ntBASIC31.81■■■□□ 2.68
Col17a1Q07563 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC31.81■■■□□ 2.68
Col17a1Q07563 Gm10175-202ENSMUST00000208752 441 ntBASIC31.81■■■□□ 2.68
Col17a1Q07563 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC31.81■■■□□ 2.68
Col17a1Q07563 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col17a1Q07563 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Col17a1Q07563 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC31.8■■■□□ 2.68
Col17a1Q07563 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC31.8■■■□□ 2.68
Col17a1Q07563 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Col17a1Q07563 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col17a1Q07563 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col17a1Q07563 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col17a1Q07563 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC31.79■■■□□ 2.68
Col17a1Q07563 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col17a1Q07563 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col17a1Q07563 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC31.79■■■□□ 2.68
Col17a1Q07563 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col17a1Q07563 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col17a1Q07563 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC31.78■■■□□ 2.68
Col17a1Q07563 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC31.78■■■□□ 2.68
Col17a1Q07563 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC31.78■■■□□ 2.68
Col17a1Q07563 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col17a1Q07563 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col17a1Q07563 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col17a1Q07563 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col17a1Q07563 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col17a1Q07563 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC31.75■■■□□ 2.67
Col17a1Q07563 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col17a1Q07563 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
Col17a1Q07563 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Col17a1Q07563 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Col17a1Q07563 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Col17a1Q07563 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Col17a1Q07563 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
Col17a1Q07563 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC31.73■■■□□ 2.67
Col17a1Q07563 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Col17a1Q07563 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
Col17a1Q07563 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
Col17a1Q07563 Gm44672-201ENSMUST00000206944 1098 ntBASIC31.73■■■□□ 2.67
Col17a1Q07563 AC153881.2-201ENSMUST00000214877 204 ntBASIC31.73■■■□□ 2.67
Col17a1Q07563 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
Col17a1Q07563 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col17a1Q07563 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC31.72■■■□□ 2.67
Col17a1Q07563 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
Col17a1Q07563 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC31.71■■■□□ 2.67
Col17a1Q07563 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Col17a1Q07563 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC31.7■■■□□ 2.67
Col17a1Q07563 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.67
Col17a1Q07563 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Col17a1Q07563 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Col17a1Q07563 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.66
Col17a1Q07563 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Col17a1Q07563 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Col17a1Q07563 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
Col17a1Q07563 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col17a1Q07563 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Col17a1Q07563 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Col17a1Q07563 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Col17a1Q07563 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Col17a1Q07563 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC31.67■■■□□ 2.66
Col17a1Q07563 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col17a1Q07563 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col17a1Q07563 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
Col17a1Q07563 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC31.66■■■□□ 2.66
Col17a1Q07563 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Col17a1Q07563 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
Col17a1Q07563 Gm25925-201ENSMUST00000158314 306 ntBASIC31.65■■■□□ 2.66
Col17a1Q07563 Gm6420-201ENSMUST00000193885 723 ntBASIC31.65■■■□□ 2.66
Col17a1Q07563 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Col17a1Q07563 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col17a1Q07563 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col17a1Q07563 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col17a1Q07563 Gm10517-202ENSMUST00000192970 758 ntBASIC31.65■■■□□ 2.66
Col17a1Q07563 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col17a1Q07563 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Col17a1Q07563 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Col17a1Q07563 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Col17a1Q07563 Gm7367-201ENSMUST00000057611 492 ntBASIC31.64■■■□□ 2.66
Col17a1Q07563 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col17a1Q07563 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col17a1Q07563 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col17a1Q07563 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC31.63■■■□□ 2.65
Col17a1Q07563 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
Col17a1Q07563 AC153881.1-201ENSMUST00000214448 284 ntBASIC31.63■■■□□ 2.65
Col17a1Q07563 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col17a1Q07563 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms