Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.35■□□□□ 0.69
ABCA4P78363 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.35■□□□□ 0.69
ABCA4P78363 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
ABCA4P78363 ALDH1A3-203ENST00000557963 1670 ntBASIC19.35■□□□□ 0.69
ABCA4P78363 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ABCA4P78363 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.35■□□□□ 0.69
ABCA4P78363 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.35■□□□□ 0.69
ABCA4P78363 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.35■□□□□ 0.69
ABCA4P78363 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.35■□□□□ 0.69
ABCA4P78363 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.34■□□□□ 0.69
ABCA4P78363 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.34■□□□□ 0.69
ABCA4P78363 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
ABCA4P78363 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ABCA4P78363 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ABCA4P78363 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ABCA4P78363 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ABCA4P78363 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ABCA4P78363 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
ABCA4P78363 AL161729.1-201ENST00000604104 1402 ntBASIC19.33■□□□□ 0.69
ABCA4P78363 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
ABCA4P78363 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ABCA4P78363 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.32■□□□□ 0.68
ABCA4P78363 AC004911.1-201ENST00000416316 871 ntBASIC19.32■□□□□ 0.68
ABCA4P78363 IGHV3-19-201ENST00000521488 291 ntBASIC19.32■□□□□ 0.68
ABCA4P78363 TERF1P2-201ENST00000583350 1212 ntBASIC19.32■□□□□ 0.68
ABCA4P78363 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.32■□□□□ 0.68
ABCA4P78363 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 AC141586.4-201ENST00000624558 1573 ntBASIC19.32■□□□□ 0.68
ABCA4P78363 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.32■□□□□ 0.68
ABCA4P78363 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ABCA4P78363 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.32■□□□□ 0.68
ABCA4P78363 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ABCA4P78363 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ABCA4P78363 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ABCA4P78363 KRT18P14-201ENST00000534205 1250 ntBASIC19.31■□□□□ 0.68
ABCA4P78363 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.31■□□□□ 0.68
ABCA4P78363 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ABCA4P78363 CCDC92B-201ENST00000575506 885 ntBASIC19.31■□□□□ 0.68
ABCA4P78363 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
ABCA4P78363 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.31■□□□□ 0.68
ABCA4P78363 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA4P78363 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA4P78363 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.3■□□□□ 0.68
ABCA4P78363 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ABCA4P78363 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA4P78363 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.3■□□□□ 0.68
ABCA4P78363 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA4P78363 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA4P78363 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.3■□□□□ 0.68
ABCA4P78363 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.3■□□□□ 0.68
ABCA4P78363 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA4P78363 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA4P78363 AC145676.1-201ENST00000514988 2004 ntBASIC19.29■□□□□ 0.68
ABCA4P78363 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA4P78363 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA4P78363 AC133637.1-201ENST00000624115 1537 ntBASIC19.29■□□□□ 0.68
ABCA4P78363 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.29■□□□□ 0.68
ABCA4P78363 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA4P78363 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
ABCA4P78363 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.29■□□□□ 0.68
ABCA4P78363 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.29■□□□□ 0.68
ABCA4P78363 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA4P78363 AC010525.1-201ENST00000585559 441 ntBASIC19.29■□□□□ 0.68
ABCA4P78363 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
ABCA4P78363 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 315.5 ms