Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV40A0A0B4J280 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
TRAV40A0A0B4J280 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
TRAV40A0A0B4J280 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV40A0A0B4J280 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV40A0A0B4J280 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 BX842568.3-201ENST00000418104 571 ntBASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV40A0A0B4J280 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 AC233992.3-201ENST00000607491 485 ntBASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV40A0A0B4J280 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV40A0A0B4J280 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRAV40A0A0B4J280 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 LINC00543-201ENST00000567234 1845 ntBASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 AC126544.1-201ENST00000580842 1059 ntBASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TRAV40A0A0B4J280 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV40A0A0B4J280 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV40A0A0B4J280 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.21■□□□□ 0.51
TRAV40A0A0B4J280 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV40A0A0B4J280 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
TRAV40A0A0B4J280 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 AC133637.1-201ENST00000624115 1537 ntBASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 AC026271.2-201ENST00000428091 497 ntBASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 SLC47A1P1-202ENST00000449666 945 ntBASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 AL139125.2-201ENST00000623134 1869 ntBASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 AC144652.1-201ENST00000609974 1624 ntBASIC18.2■□□□□ 0.5
TRAV40A0A0B4J280 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV40A0A0B4J280 IRS3P-201ENST00000223076 1006 ntBASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms