Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 DUSP8P5-201ENST00000422884 1815 ntBASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 AC142381.2-201ENST00000566120 298 ntBASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 AC068473.5-201ENST00000616428 2072 ntBASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RARRES2P11-201ENST00000635158 484 ntBASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC30.07■■■□□ 2.41
SENP3-EIF4A1A0A087X0R7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.07■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 AC092028.1-203ENST00000608262 953 ntBASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms