Protein–RNA interactions for Protein: Q9UN74

PCDHA4, Protocadherin alpha-4, humanhuman

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4Q9UN74 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.98■■■□□ 2.71
PCDHA4Q9UN74 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
PCDHA4Q9UN74 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
PCDHA4Q9UN74 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
PCDHA4Q9UN74 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
PCDHA4Q9UN74 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.94■■■□□ 2.7
PCDHA4Q9UN74 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.94■■■□□ 2.7
PCDHA4Q9UN74 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
PCDHA4Q9UN74 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.93■■■□□ 2.7
PCDHA4Q9UN74 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.91■■■□□ 2.7
PCDHA4Q9UN74 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
PCDHA4Q9UN74 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
PCDHA4Q9UN74 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
PCDHA4Q9UN74 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
PCDHA4Q9UN74 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
PCDHA4Q9UN74 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.86■■■□□ 2.69
PCDHA4Q9UN74 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
PCDHA4Q9UN74 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
PCDHA4Q9UN74 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.84■■■□□ 2.69
PCDHA4Q9UN74 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
PCDHA4Q9UN74 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.79■■■□□ 2.68
PCDHA4Q9UN74 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PCDHA4Q9UN74 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.77■■■□□ 2.68
PCDHA4Q9UN74 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.77■■■□□ 2.68
PCDHA4Q9UN74 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.76■■■□□ 2.67
PCDHA4Q9UN74 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.75■■■□□ 2.67
PCDHA4Q9UN74 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
PCDHA4Q9UN74 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCDHA4Q9UN74 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
PCDHA4Q9UN74 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.66■■■□□ 2.66
PCDHA4Q9UN74 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.65■■■□□ 2.66
PCDHA4Q9UN74 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.65
PCDHA4Q9UN74 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.61■■■□□ 2.65
PCDHA4Q9UN74 RARRES2P7-201ENST00000567349 469 ntBASIC31.61■■■□□ 2.65
PCDHA4Q9UN74 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
PCDHA4Q9UN74 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.6■■■□□ 2.65
PCDHA4Q9UN74 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
PCDHA4Q9UN74 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.59■■■□□ 2.65
PCDHA4Q9UN74 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
PCDHA4Q9UN74 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.59■■■□□ 2.65
PCDHA4Q9UN74 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
PCDHA4Q9UN74 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.56■■■□□ 2.64
PCDHA4Q9UN74 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.55■■■□□ 2.64
PCDHA4Q9UN74 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
PCDHA4Q9UN74 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
PCDHA4Q9UN74 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
PCDHA4Q9UN74 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
PCDHA4Q9UN74 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
PCDHA4Q9UN74 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
PCDHA4Q9UN74 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.52■■■□□ 2.64
PCDHA4Q9UN74 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
PCDHA4Q9UN74 AC120057.4-201ENST00000624722 1615 ntBASIC31.51■■■□□ 2.63
PCDHA4Q9UN74 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.49■■■□□ 2.63
PCDHA4Q9UN74 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
PCDHA4Q9UN74 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
PCDHA4Q9UN74 SETD8P1-201ENST00000623146 1180 ntBASIC31.47■■■□□ 2.63
PCDHA4Q9UN74 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
PCDHA4Q9UN74 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
PCDHA4Q9UN74 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
PCDHA4Q9UN74 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
PCDHA4Q9UN74 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
PCDHA4Q9UN74 AL133380.1-201ENST00000506013 324 ntBASIC31.45■■■□□ 2.63
PCDHA4Q9UN74 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
PCDHA4Q9UN74 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PCDHA4Q9UN74 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PCDHA4Q9UN74 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.43■■■□□ 2.62
PCDHA4Q9UN74 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
PCDHA4Q9UN74 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
PCDHA4Q9UN74 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
PCDHA4Q9UN74 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
PCDHA4Q9UN74 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
PCDHA4Q9UN74 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
PCDHA4Q9UN74 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
PCDHA4Q9UN74 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
PCDHA4Q9UN74 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
PCDHA4Q9UN74 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
PCDHA4Q9UN74 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
PCDHA4Q9UN74 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.37■■■□□ 2.61
PCDHA4Q9UN74 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PCDHA4Q9UN74 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
PCDHA4Q9UN74 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA4Q9UN74 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.31■■■□□ 2.6
PCDHA4Q9UN74 AC136428.2-201ENST00000563187 214 ntBASIC31.28■■■□□ 2.6
PCDHA4Q9UN74 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
PCDHA4Q9UN74 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
PCDHA4Q9UN74 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
PCDHA4Q9UN74 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.25■■■□□ 2.59
PCDHA4Q9UN74 AC097358.2-201ENST00000607541 1159 ntBASIC31.25■■■□□ 2.59
PCDHA4Q9UN74 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
PCDHA4Q9UN74 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.24■■■□□ 2.59
PCDHA4Q9UN74 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PCDHA4Q9UN74 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PCDHA4Q9UN74 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
PCDHA4Q9UN74 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
PCDHA4Q9UN74 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.21■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms