Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Nkx2-4Q9EQM3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Nkx2-4Q9EQM3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Nkx2-4Q9EQM3 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
Nkx2-4Q9EQM3 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Nkx2-4Q9EQM3 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Nkx2-4Q9EQM3 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.07■■■□□ 2.08
Nkx2-4Q9EQM3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.06■■■□□ 2.08
Nkx2-4Q9EQM3 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Nkx2-4Q9EQM3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC28.04■■■□□ 2.08
Nkx2-4Q9EQM3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Nkx2-4Q9EQM3 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Nkx2-4Q9EQM3 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Nkx2-4Q9EQM3 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC28.03■■■□□ 2.08
Nkx2-4Q9EQM3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
Nkx2-4Q9EQM3 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Nkx2-4Q9EQM3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Nkx2-4Q9EQM3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Nkx2-4Q9EQM3 Zfp131-207ENSMUST00000224946 1783 ntBASIC27.98■■■□□ 2.07
Nkx2-4Q9EQM3 Gm9397-201ENSMUST00000200125 605 ntBASIC27.97■■■□□ 2.07
Nkx2-4Q9EQM3 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Nkx2-4Q9EQM3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
Nkx2-4Q9EQM3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Nkx2-4Q9EQM3 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC27.93■■■□□ 2.06
Nkx2-4Q9EQM3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
Nkx2-4Q9EQM3 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.92■■■□□ 2.06
Nkx2-4Q9EQM3 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Nkx2-4Q9EQM3 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Nkx2-4Q9EQM3 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Nkx2-4Q9EQM3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.9■■■□□ 2.06
Nkx2-4Q9EQM3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Nkx2-4Q9EQM3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.89■■■□□ 2.06
Nkx2-4Q9EQM3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.89■■■□□ 2.05
Nkx2-4Q9EQM3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Nkx2-4Q9EQM3 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
Nkx2-4Q9EQM3 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Nkx2-4Q9EQM3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Nkx2-4Q9EQM3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.83■■■□□ 2.05
Nkx2-4Q9EQM3 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
Nkx2-4Q9EQM3 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Nkx2-4Q9EQM3 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.81■■■□□ 2.04
Nkx2-4Q9EQM3 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
Nkx2-4Q9EQM3 Mipep-204ENSMUST00000225043 1548 ntBASIC27.79■■■□□ 2.04
Nkx2-4Q9EQM3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.78■■■□□ 2.04
Nkx2-4Q9EQM3 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Nkx2-4Q9EQM3 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC27.75■■■□□ 2.03
Nkx2-4Q9EQM3 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC27.74■■■□□ 2.03
Nkx2-4Q9EQM3 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Nkx2-4Q9EQM3 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Nkx2-4Q9EQM3 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Nkx2-4Q9EQM3 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Nkx2-4Q9EQM3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Nkx2-4Q9EQM3 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.67■■■□□ 2.02
Nkx2-4Q9EQM3 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC27.66■■■□□ 2.02
Nkx2-4Q9EQM3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.65■■■□□ 2.02
Nkx2-4Q9EQM3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.64■■■□□ 2.02
Nkx2-4Q9EQM3 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC27.62■■■□□ 2.01
Nkx2-4Q9EQM3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Nkx2-4Q9EQM3 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
Nkx2-4Q9EQM3 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Nkx2-4Q9EQM3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Nkx2-4Q9EQM3 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
Nkx2-4Q9EQM3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.5■■□□□ 1.99
Nkx2-4Q9EQM3 Gm9939-201ENSMUST00000067161 1154 ntBASIC27.5■■□□□ 1.99
Nkx2-4Q9EQM3 Gm24970-201ENSMUST00000175582 82 ntBASIC27.49■■□□□ 1.99
Nkx2-4Q9EQM3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
Nkx2-4Q9EQM3 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC27.48■■□□□ 1.99
Nkx2-4Q9EQM3 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC27.46■■□□□ 1.99
Nkx2-4Q9EQM3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Nkx2-4Q9EQM3 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
Nkx2-4Q9EQM3 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Nkx2-4Q9EQM3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC27.42■■□□□ 1.98
Nkx2-4Q9EQM3 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Nkx2-4Q9EQM3 Gm8503-201ENSMUST00000118131 455 ntBASIC27.37■■□□□ 1.97
Nkx2-4Q9EQM3 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Nkx2-4Q9EQM3 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Nkx2-4Q9EQM3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Nkx2-4Q9EQM3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Nkx2-4Q9EQM3 Gm6821-201ENSMUST00000107540 542 ntBASIC27.29■■□□□ 1.96
Nkx2-4Q9EQM3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.29■■□□□ 1.96
Nkx2-4Q9EQM3 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Nkx2-4Q9EQM3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.28■■□□□ 1.96
Nkx2-4Q9EQM3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Nkx2-4Q9EQM3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC27.27■■□□□ 1.96
Nkx2-4Q9EQM3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC27.26■■□□□ 1.96
Nkx2-4Q9EQM3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Nkx2-4Q9EQM3 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Nkx2-4Q9EQM3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Nkx2-4Q9EQM3 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
Nkx2-4Q9EQM3 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Nkx2-4Q9EQM3 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Nkx2-4Q9EQM3 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Nkx2-4Q9EQM3 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
Nkx2-4Q9EQM3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
Nkx2-4Q9EQM3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Nkx2-4Q9EQM3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Nkx2-4Q9EQM3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Nkx2-4Q9EQM3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.05■■□□□ 1.92
Nkx2-4Q9EQM3 Gm43863-201ENSMUST00000203822 1192 ntBASIC27.03■■□□□ 1.92
Nkx2-4Q9EQM3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms