Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
ZKSCAN3Q9BRR0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.83■■■□□ 2.85
ZKSCAN3Q9BRR0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.81■■■□□ 2.84
ZKSCAN3Q9BRR0 RARRES2P7-201ENST00000567349 469 ntBASIC32.8■■■□□ 2.84
ZKSCAN3Q9BRR0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.78■■■□□ 2.84
ZKSCAN3Q9BRR0 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC32.77■■■□□ 2.84
ZKSCAN3Q9BRR0 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
ZKSCAN3Q9BRR0 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
ZKSCAN3Q9BRR0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
ZKSCAN3Q9BRR0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC32.74■■■□□ 2.83
ZKSCAN3Q9BRR0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.74■■■□□ 2.83
ZKSCAN3Q9BRR0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.74■■■□□ 2.83
ZKSCAN3Q9BRR0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
ZKSCAN3Q9BRR0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.72■■■□□ 2.83
ZKSCAN3Q9BRR0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
ZKSCAN3Q9BRR0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.71■■■□□ 2.83
ZKSCAN3Q9BRR0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
ZKSCAN3Q9BRR0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
ZKSCAN3Q9BRR0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
ZKSCAN3Q9BRR0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
ZKSCAN3Q9BRR0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.68■■■□□ 2.82
ZKSCAN3Q9BRR0 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
ZKSCAN3Q9BRR0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
ZKSCAN3Q9BRR0 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
ZKSCAN3Q9BRR0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.65■■■□□ 2.82
ZKSCAN3Q9BRR0 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.63■■■□□ 2.81
ZKSCAN3Q9BRR0 SETD8P1-201ENST00000623146 1180 ntBASIC32.62■■■□□ 2.81
ZKSCAN3Q9BRR0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
ZKSCAN3Q9BRR0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
ZKSCAN3Q9BRR0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
ZKSCAN3Q9BRR0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
ZKSCAN3Q9BRR0 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.6■■■□□ 2.81
ZKSCAN3Q9BRR0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
ZKSCAN3Q9BRR0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
ZKSCAN3Q9BRR0 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
ZKSCAN3Q9BRR0 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
ZKSCAN3Q9BRR0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.55■■■□□ 2.8
ZKSCAN3Q9BRR0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
ZKSCAN3Q9BRR0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.54■■■□□ 2.8
ZKSCAN3Q9BRR0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.52■■■□□ 2.8
ZKSCAN3Q9BRR0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
ZKSCAN3Q9BRR0 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.51■■■□□ 2.8
ZKSCAN3Q9BRR0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.5■■■□□ 2.79
ZKSCAN3Q9BRR0 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.5■■■□□ 2.79
ZKSCAN3Q9BRR0 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
ZKSCAN3Q9BRR0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.48■■■□□ 2.79
ZKSCAN3Q9BRR0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
ZKSCAN3Q9BRR0 AC136428.2-201ENST00000563187 214 ntBASIC32.47■■■□□ 2.79
ZKSCAN3Q9BRR0 AC097358.2-201ENST00000607541 1159 ntBASIC32.46■■■□□ 2.79
ZKSCAN3Q9BRR0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
ZKSCAN3Q9BRR0 AL133380.1-201ENST00000506013 324 ntBASIC32.45■■■□□ 2.79
ZKSCAN3Q9BRR0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
ZKSCAN3Q9BRR0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
ZKSCAN3Q9BRR0 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
ZKSCAN3Q9BRR0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
ZKSCAN3Q9BRR0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32.41■■■□□ 2.78
ZKSCAN3Q9BRR0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
ZKSCAN3Q9BRR0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
ZKSCAN3Q9BRR0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.38■■■□□ 2.77
ZKSCAN3Q9BRR0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
ZKSCAN3Q9BRR0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.38■■■□□ 2.77
ZKSCAN3Q9BRR0 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
ZKSCAN3Q9BRR0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.37■■■□□ 2.77
ZKSCAN3Q9BRR0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.33■■■□□ 2.77
ZKSCAN3Q9BRR0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.77
ZKSCAN3Q9BRR0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.32■■■□□ 2.76
ZKSCAN3Q9BRR0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.32■■■□□ 2.76
ZKSCAN3Q9BRR0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
ZKSCAN3Q9BRR0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.3■■■□□ 2.76
ZKSCAN3Q9BRR0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
ZKSCAN3Q9BRR0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
ZKSCAN3Q9BRR0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.28■■■□□ 2.76
ZKSCAN3Q9BRR0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
ZKSCAN3Q9BRR0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
ZKSCAN3Q9BRR0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
ZKSCAN3Q9BRR0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.25■■■□□ 2.75
ZKSCAN3Q9BRR0 CAHM-201ENST00000604200 896 ntBASIC32.23■■■□□ 2.75
ZKSCAN3Q9BRR0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
ZKSCAN3Q9BRR0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
ZKSCAN3Q9BRR0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
ZKSCAN3Q9BRR0 AC120057.4-201ENST00000624722 1615 ntBASIC32.19■■■□□ 2.74
ZKSCAN3Q9BRR0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
ZKSCAN3Q9BRR0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC32.17■■■□□ 2.74
ZKSCAN3Q9BRR0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.17■■■□□ 2.74
ZKSCAN3Q9BRR0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.17■■■□□ 2.74
ZKSCAN3Q9BRR0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
ZKSCAN3Q9BRR0 SUZ12P1-203ENST00000578195 985 ntBASIC32.14■■■□□ 2.74
ZKSCAN3Q9BRR0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.14■■■□□ 2.74
ZKSCAN3Q9BRR0 AL391121.1-201ENST00000607967 1349 ntBASIC32.12■■■□□ 2.73
ZKSCAN3Q9BRR0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
ZKSCAN3Q9BRR0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
ZKSCAN3Q9BRR0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
ZKSCAN3Q9BRR0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
ZKSCAN3Q9BRR0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
ZKSCAN3Q9BRR0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
ZKSCAN3Q9BRR0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
ZKSCAN3Q9BRR0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.08■■■□□ 2.73
ZKSCAN3Q9BRR0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.08■■■□□ 2.73
ZKSCAN3Q9BRR0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
ZKSCAN3Q9BRR0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC32.07■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms