Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC145285.7-201ENST00000614819 1539 ntBASIC28.59■■■□□ 2.17
VPS13AQ96RL7 AC087741.3-201ENST00000624270 1347 ntBASIC28.58■■■□□ 2.17
VPS13AQ96RL7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.57■■■□□ 2.16
VPS13AQ96RL7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
VPS13AQ96RL7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
VPS13AQ96RL7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
VPS13AQ96RL7 MIR3665-201ENST00000578708 105 ntBASIC28.54■■■□□ 2.16
VPS13AQ96RL7 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.16
VPS13AQ96RL7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
VPS13AQ96RL7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.47■■■□□ 2.15
VPS13AQ96RL7 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
VPS13AQ96RL7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
VPS13AQ96RL7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.46■■■□□ 2.15
VPS13AQ96RL7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.46■■■□□ 2.15
VPS13AQ96RL7 DUX4L28-201ENST00000623687 678 ntBASIC28.44■■■□□ 2.14
VPS13AQ96RL7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
VPS13AQ96RL7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.44■■■□□ 2.14
VPS13AQ96RL7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC28.43■■■□□ 2.14
VPS13AQ96RL7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
VPS13AQ96RL7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.42■■■□□ 2.14
VPS13AQ96RL7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
VPS13AQ96RL7 AC044849.2-201ENST00000606596 710 ntBASIC28.42■■■□□ 2.14
VPS13AQ96RL7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.41■■■□□ 2.14
VPS13AQ96RL7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.41■■■□□ 2.14
VPS13AQ96RL7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.4■■■□□ 2.14
VPS13AQ96RL7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.38■■■□□ 2.13
VPS13AQ96RL7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
VPS13AQ96RL7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
VPS13AQ96RL7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.34■■■□□ 2.13
VPS13AQ96RL7 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
VPS13AQ96RL7 MIR4449-201ENST00000578365 66 ntBASIC28.34■■■□□ 2.13
VPS13AQ96RL7 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.34■■■□□ 2.13
VPS13AQ96RL7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS13AQ96RL7 AL133380.1-201ENST00000506013 324 ntBASIC28.33■■■□□ 2.13
VPS13AQ96RL7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.3■■■□□ 2.12
VPS13AQ96RL7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.3■■■□□ 2.12
VPS13AQ96RL7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.29■■■□□ 2.12
VPS13AQ96RL7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.29■■■□□ 2.12
VPS13AQ96RL7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.27■■■□□ 2.12
VPS13AQ96RL7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
VPS13AQ96RL7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.27■■■□□ 2.12
VPS13AQ96RL7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS13AQ96RL7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
VPS13AQ96RL7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.26■■■□□ 2.11
VPS13AQ96RL7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.25■■■□□ 2.11
VPS13AQ96RL7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
VPS13AQ96RL7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS13AQ96RL7 AC005559.1-201ENST00000589661 871 ntBASIC28.23■■■□□ 2.11
VPS13AQ96RL7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.23■■■□□ 2.11
VPS13AQ96RL7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.22■■■□□ 2.11
VPS13AQ96RL7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
VPS13AQ96RL7 MIR762-201ENST00000390236 83 ntBASIC28.21■■■□□ 2.11
VPS13AQ96RL7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS13AQ96RL7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
VPS13AQ96RL7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
VPS13AQ96RL7 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.19■■■□□ 2.1
VPS13AQ96RL7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS13AQ96RL7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
VPS13AQ96RL7 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.12■■■□□ 2.09
VPS13AQ96RL7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
VPS13AQ96RL7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
VPS13AQ96RL7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
VPS13AQ96RL7 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.09■■■□□ 2.09
VPS13AQ96RL7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.08■■■□□ 2.09
VPS13AQ96RL7 HSD17B1P1-201ENST00000590052 955 ntBASIC28.07■■■□□ 2.08
VPS13AQ96RL7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.07■■■□□ 2.08
VPS13AQ96RL7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.04■■■□□ 2.08
VPS13AQ96RL7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
VPS13AQ96RL7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
VPS13AQ96RL7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
VPS13AQ96RL7 ZNRF2P2-203ENST00000454624 420 ntBASIC28.03■■■□□ 2.08
VPS13AQ96RL7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.01■■■□□ 2.07
VPS13AQ96RL7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
VPS13AQ96RL7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
VPS13AQ96RL7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.99■■■□□ 2.07
VPS13AQ96RL7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
VPS13AQ96RL7 MIR639-201ENST00000384974 98 ntBASIC27.99■■■□□ 2.07
VPS13AQ96RL7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
VPS13AQ96RL7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
VPS13AQ96RL7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
VPS13AQ96RL7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.92■■■□□ 2.06
VPS13AQ96RL7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.91■■■□□ 2.06
VPS13AQ96RL7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
VPS13AQ96RL7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.89■■■□□ 2.06
VPS13AQ96RL7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
VPS13AQ96RL7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
VPS13AQ96RL7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
VPS13AQ96RL7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
VPS13AQ96RL7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
VPS13AQ96RL7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.86■■■□□ 2.05
VPS13AQ96RL7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.85■■■□□ 2.05
VPS13AQ96RL7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
VPS13AQ96RL7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.85■■■□□ 2.05
VPS13AQ96RL7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
VPS13AQ96RL7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.83■■■□□ 2.05
VPS13AQ96RL7 MIR3648-2-201ENST00000581792 180 ntBASIC27.83■■■□□ 2.05
VPS13AQ96RL7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.83■■■□□ 2.05
VPS13AQ96RL7 MIR3648-1-201ENST00000615959 180 ntBASIC27.83■■■□□ 2.05
VPS13AQ96RL7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.83■■■□□ 2.05
VPS13AQ96RL7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms