Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Mipep-204ENSMUST00000225043 1548 ntBASIC27.55■■■□□ 2
Pcdha1Q91Y21 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Pcdha1Q91Y21 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■■□□ 2
Pcdha1Q91Y21 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Pcdha1Q91Y21 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
Pcdha1Q91Y21 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
Pcdha1Q91Y21 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
Pcdha1Q91Y21 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdha1Q91Y21 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdha1Q91Y21 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
Pcdha1Q91Y21 Peli2-204ENSMUST00000226513 1320 ntBASIC27.46■■□□□ 1.99
Pcdha1Q91Y21 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha1Q91Y21 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha1Q91Y21 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27.43■■□□□ 1.98
Pcdha1Q91Y21 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdha1Q91Y21 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
Pcdha1Q91Y21 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Pcdha1Q91Y21 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Pcdha1Q91Y21 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Pcdha1Q91Y21 Gm16148-201ENSMUST00000119653 893 ntBASIC27.39■■□□□ 1.98
Pcdha1Q91Y21 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
Pcdha1Q91Y21 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Pcdha1Q91Y21 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Pcdha1Q91Y21 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
Pcdha1Q91Y21 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Pcdha1Q91Y21 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27.34■■□□□ 1.97
Pcdha1Q91Y21 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Pcdha1Q91Y21 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Pcdha1Q91Y21 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.31■■□□□ 1.96
Pcdha1Q91Y21 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Pcdha1Q91Y21 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Pcdha1Q91Y21 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.28■■□□□ 1.96
Pcdha1Q91Y21 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Pcdha1Q91Y21 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
Pcdha1Q91Y21 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Pcdha1Q91Y21 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Pcdha1Q91Y21 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Pcdha1Q91Y21 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC27.21■■□□□ 1.95
Pcdha1Q91Y21 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.18■■□□□ 1.94
Pcdha1Q91Y21 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Pcdha1Q91Y21 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Pcdha1Q91Y21 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
Pcdha1Q91Y21 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.15■■□□□ 1.94
Pcdha1Q91Y21 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Pcdha1Q91Y21 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Pcdha1Q91Y21 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
Pcdha1Q91Y21 Gm2415-204ENSMUST00000190235 2004 ntBASIC27.09■■□□□ 1.93
Pcdha1Q91Y21 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Pcdha1Q91Y21 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Pcdha1Q91Y21 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Pcdha1Q91Y21 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Pcdha1Q91Y21 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC27.05■■□□□ 1.92
Pcdha1Q91Y21 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Pcdha1Q91Y21 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.04■■□□□ 1.92
Pcdha1Q91Y21 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC27.04■■□□□ 1.92
Pcdha1Q91Y21 Tdp2-203ENSMUST00000223804 1136 ntBASIC27■■□□□ 1.91
Pcdha1Q91Y21 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
Pcdha1Q91Y21 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Pcdha1Q91Y21 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Pcdha1Q91Y21 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Pcdha1Q91Y21 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Pcdha1Q91Y21 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.94■■□□□ 1.9
Pcdha1Q91Y21 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
Pcdha1Q91Y21 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Pcdha1Q91Y21 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Pcdha1Q91Y21 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.89■■□□□ 1.89
Pcdha1Q91Y21 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
Pcdha1Q91Y21 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Pcdha1Q91Y21 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC26.88■■□□□ 1.89
Pcdha1Q91Y21 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
Pcdha1Q91Y21 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Pcdha1Q91Y21 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Pcdha1Q91Y21 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Pcdha1Q91Y21 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Pcdha1Q91Y21 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Pcdha1Q91Y21 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Pcdha1Q91Y21 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
Pcdha1Q91Y21 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.8■■□□□ 1.88
Pcdha1Q91Y21 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Pcdha1Q91Y21 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdha1Q91Y21 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdha1Q91Y21 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdha1Q91Y21 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.77■■□□□ 1.88
Pcdha1Q91Y21 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdha1Q91Y21 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
Pcdha1Q91Y21 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.75■■□□□ 1.87
Pcdha1Q91Y21 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Pcdha1Q91Y21 Gm45855-201ENSMUST00000212546 880 ntBASIC26.7■■□□□ 1.86
Pcdha1Q91Y21 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Pcdha1Q91Y21 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Pcdha1Q91Y21 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Pcdha1Q91Y21 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Pcdha1Q91Y21 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Pcdha1Q91Y21 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Pcdha1Q91Y21 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Pcdha1Q91Y21 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Pcdha1Q91Y21 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Pcdha1Q91Y21 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.66■■□□□ 1.86
Pcdha1Q91Y21 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Pcdha1Q91Y21 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms