Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
CLHC1Q8NHS4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
CLHC1Q8NHS4 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CLHC1Q8NHS4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CLHC1Q8NHS4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CLHC1Q8NHS4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CLHC1Q8NHS4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CLHC1Q8NHS4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.57■■□□□ 1.84
CLHC1Q8NHS4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.57■■□□□ 1.84
CLHC1Q8NHS4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CLHC1Q8NHS4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
CLHC1Q8NHS4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
CLHC1Q8NHS4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
CLHC1Q8NHS4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.55■■□□□ 1.84
CLHC1Q8NHS4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.55■■□□□ 1.84
CLHC1Q8NHS4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
CLHC1Q8NHS4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CLHC1Q8NHS4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.54■■□□□ 1.84
CLHC1Q8NHS4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CLHC1Q8NHS4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CLHC1Q8NHS4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.51■■□□□ 1.83
CLHC1Q8NHS4 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLHC1Q8NHS4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
CLHC1Q8NHS4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLHC1Q8NHS4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLHC1Q8NHS4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLHC1Q8NHS4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CLHC1Q8NHS4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.48■■□□□ 1.83
CLHC1Q8NHS4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.48■■□□□ 1.83
CLHC1Q8NHS4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CLHC1Q8NHS4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CLHC1Q8NHS4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.47■■□□□ 1.83
CLHC1Q8NHS4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.45■■□□□ 1.82
CLHC1Q8NHS4 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.43■■□□□ 1.82
CLHC1Q8NHS4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CLHC1Q8NHS4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CLHC1Q8NHS4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
CLHC1Q8NHS4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.42■■□□□ 1.82
CLHC1Q8NHS4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CLHC1Q8NHS4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CLHC1Q8NHS4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.38■■□□□ 1.81
CLHC1Q8NHS4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CLHC1Q8NHS4 DYNLL1-208ENST00000550178 581 ntBASIC26.38■■□□□ 1.81
CLHC1Q8NHS4 AC120057.4-201ENST00000624722 1615 ntBASIC26.38■■□□□ 1.81
CLHC1Q8NHS4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CLHC1Q8NHS4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CLHC1Q8NHS4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CLHC1Q8NHS4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.32■■□□□ 1.8
CLHC1Q8NHS4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CLHC1Q8NHS4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
CLHC1Q8NHS4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.29■■□□□ 1.8
CLHC1Q8NHS4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CLHC1Q8NHS4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CLHC1Q8NHS4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.29■■□□□ 1.8
CLHC1Q8NHS4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLHC1Q8NHS4 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLHC1Q8NHS4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.28■■□□□ 1.8
CLHC1Q8NHS4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLHC1Q8NHS4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLHC1Q8NHS4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLHC1Q8NHS4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLHC1Q8NHS4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.24■■□□□ 1.79
CLHC1Q8NHS4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.23■■□□□ 1.79
CLHC1Q8NHS4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CLHC1Q8NHS4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLHC1Q8NHS4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.22■■□□□ 1.79
CLHC1Q8NHS4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLHC1Q8NHS4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.21■■□□□ 1.79
CLHC1Q8NHS4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CLHC1Q8NHS4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLHC1Q8NHS4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLHC1Q8NHS4 AL031258.1-201ENST00000623562 325 ntBASIC26.18■■□□□ 1.78
CLHC1Q8NHS4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CLHC1Q8NHS4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.16■■□□□ 1.78
CLHC1Q8NHS4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC26.15■■□□□ 1.78
CLHC1Q8NHS4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.15■■□□□ 1.78
CLHC1Q8NHS4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.14■■□□□ 1.78
CLHC1Q8NHS4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CLHC1Q8NHS4 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CLHC1Q8NHS4 AP002365.1-201ENST00000603448 772 ntBASIC26.12■■□□□ 1.77
CLHC1Q8NHS4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CLHC1Q8NHS4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
CLHC1Q8NHS4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CLHC1Q8NHS4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CLHC1Q8NHS4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CLHC1Q8NHS4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.1■■□□□ 1.77
CLHC1Q8NHS4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CLHC1Q8NHS4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.06■■□□□ 1.76
CLHC1Q8NHS4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CLHC1Q8NHS4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CLHC1Q8NHS4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CLHC1Q8NHS4 ABCB10P1-201ENST00000614297 2181 ntBASIC26.03■■□□□ 1.76
CLHC1Q8NHS4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CLHC1Q8NHS4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CLHC1Q8NHS4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CLHC1Q8NHS4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
CLHC1Q8NHS4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.01■■□□□ 1.75
CLHC1Q8NHS4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26■■□□□ 1.75
CLHC1Q8NHS4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CLHC1Q8NHS4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms