Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Mipep-204ENSMUST00000225043 1548 ntBASIC24.4■■□□□ 1.5
Clrn3Q8BHH8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Clrn3Q8BHH8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
Clrn3Q8BHH8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Clrn3Q8BHH8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
Clrn3Q8BHH8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Clrn3Q8BHH8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
Clrn3Q8BHH8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Clrn3Q8BHH8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Clrn3Q8BHH8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Clrn3Q8BHH8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Clrn3Q8BHH8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Clrn3Q8BHH8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Clrn3Q8BHH8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Clrn3Q8BHH8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC24.21■■□□□ 1.47
Clrn3Q8BHH8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Clrn3Q8BHH8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Clrn3Q8BHH8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Clrn3Q8BHH8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Clrn3Q8BHH8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Clrn3Q8BHH8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Clrn3Q8BHH8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Clrn3Q8BHH8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Clrn3Q8BHH8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Clrn3Q8BHH8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.15■■□□□ 1.46
Clrn3Q8BHH8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Clrn3Q8BHH8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Clrn3Q8BHH8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Clrn3Q8BHH8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Clrn3Q8BHH8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Clrn3Q8BHH8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Clrn3Q8BHH8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Clrn3Q8BHH8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Clrn3Q8BHH8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Clrn3Q8BHH8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Clrn3Q8BHH8 Gm2415-204ENSMUST00000190235 2004 ntBASIC24.06■■□□□ 1.44
Clrn3Q8BHH8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Clrn3Q8BHH8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Clrn3Q8BHH8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
Clrn3Q8BHH8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Clrn3Q8BHH8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Clrn3Q8BHH8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.01■■□□□ 1.43
Clrn3Q8BHH8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Clrn3Q8BHH8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.97■■□□□ 1.43
Clrn3Q8BHH8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Clrn3Q8BHH8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.94■■□□□ 1.42
Clrn3Q8BHH8 Gm6658-202ENSMUST00000209493 1885 ntBASIC23.93■■□□□ 1.42
Clrn3Q8BHH8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Clrn3Q8BHH8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Clrn3Q8BHH8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Clrn3Q8BHH8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
Clrn3Q8BHH8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Clrn3Q8BHH8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Clrn3Q8BHH8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Clrn3Q8BHH8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Clrn3Q8BHH8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
Clrn3Q8BHH8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Clrn3Q8BHH8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Clrn3Q8BHH8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Clrn3Q8BHH8 Gm24804-201ENSMUST00000174982 85 ntBASIC23.88■■□□□ 1.41
Clrn3Q8BHH8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Clrn3Q8BHH8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Clrn3Q8BHH8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Clrn3Q8BHH8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Clrn3Q8BHH8 Peli2-204ENSMUST00000226513 1320 ntBASIC23.82■■□□□ 1.4
Clrn3Q8BHH8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Clrn3Q8BHH8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Clrn3Q8BHH8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Clrn3Q8BHH8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Clrn3Q8BHH8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Clrn3Q8BHH8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Clrn3Q8BHH8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Clrn3Q8BHH8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Clrn3Q8BHH8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Clrn3Q8BHH8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Clrn3Q8BHH8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.74■■□□□ 1.39
Clrn3Q8BHH8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Clrn3Q8BHH8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Clrn3Q8BHH8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Clrn3Q8BHH8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC23.7■■□□□ 1.38
Clrn3Q8BHH8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Clrn3Q8BHH8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Clrn3Q8BHH8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Clrn3Q8BHH8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Clrn3Q8BHH8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Clrn3Q8BHH8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Clrn3Q8BHH8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Clrn3Q8BHH8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Clrn3Q8BHH8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Clrn3Q8BHH8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Clrn3Q8BHH8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Clrn3Q8BHH8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Clrn3Q8BHH8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Clrn3Q8BHH8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Clrn3Q8BHH8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Clrn3Q8BHH8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.59■■□□□ 1.37
Clrn3Q8BHH8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.58■■□□□ 1.37
Clrn3Q8BHH8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Clrn3Q8BHH8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.58■■□□□ 1.36
Clrn3Q8BHH8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms