Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Vps54Q5SPW0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
Vps54Q5SPW0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Vps54Q5SPW0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Vps54Q5SPW0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
Vps54Q5SPW0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Vps54Q5SPW0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.87■■■□□ 2.69
Vps54Q5SPW0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Vps54Q5SPW0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Vps54Q5SPW0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC31.83■■■□□ 2.69
Vps54Q5SPW0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.82■■■□□ 2.68
Vps54Q5SPW0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Vps54Q5SPW0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Vps54Q5SPW0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Vps54Q5SPW0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Vps54Q5SPW0 Peli2-204ENSMUST00000226513 1320 ntBASIC31.75■■■□□ 2.67
Vps54Q5SPW0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Vps54Q5SPW0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Vps54Q5SPW0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Vps54Q5SPW0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Vps54Q5SPW0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Vps54Q5SPW0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Vps54Q5SPW0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC31.7■■■□□ 2.67
Vps54Q5SPW0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Vps54Q5SPW0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Vps54Q5SPW0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Vps54Q5SPW0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC31.65■■■□□ 2.66
Vps54Q5SPW0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Vps54Q5SPW0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC31.6■■■□□ 2.65
Vps54Q5SPW0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Vps54Q5SPW0 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.59■■■□□ 2.65
Vps54Q5SPW0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Vps54Q5SPW0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Vps54Q5SPW0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Vps54Q5SPW0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
Vps54Q5SPW0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.55■■■□□ 2.64
Vps54Q5SPW0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Vps54Q5SPW0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Vps54Q5SPW0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
Vps54Q5SPW0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Vps54Q5SPW0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Vps54Q5SPW0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
Vps54Q5SPW0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC31.48■■■□□ 2.63
Vps54Q5SPW0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Vps54Q5SPW0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.45■■■□□ 2.63
Vps54Q5SPW0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Vps54Q5SPW0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Vps54Q5SPW0 Gm16148-201ENSMUST00000119653 893 ntBASIC31.42■■■□□ 2.62
Vps54Q5SPW0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Vps54Q5SPW0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Vps54Q5SPW0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Vps54Q5SPW0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Vps54Q5SPW0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Vps54Q5SPW0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Vps54Q5SPW0 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.32■■■□□ 2.6
Vps54Q5SPW0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Vps54Q5SPW0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Vps54Q5SPW0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
Vps54Q5SPW0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Vps54Q5SPW0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC31.26■■■□□ 2.59
Vps54Q5SPW0 Zfp131-205ENSMUST00000223812 663 ntBASIC31.26■■■□□ 2.59
Vps54Q5SPW0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Vps54Q5SPW0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Vps54Q5SPW0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Vps54Q5SPW0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Vps54Q5SPW0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Vps54Q5SPW0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Vps54Q5SPW0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
Vps54Q5SPW0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC31.17■■■□□ 2.58
Vps54Q5SPW0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.17■■■□□ 2.58
Vps54Q5SPW0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
Vps54Q5SPW0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Vps54Q5SPW0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Vps54Q5SPW0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC31.12■■■□□ 2.57
Vps54Q5SPW0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
Vps54Q5SPW0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Vps54Q5SPW0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC31.07■■■□□ 2.56
Vps54Q5SPW0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Vps54Q5SPW0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
Vps54Q5SPW0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Vps54Q5SPW0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Vps54Q5SPW0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Vps54Q5SPW0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
Vps54Q5SPW0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Vps54Q5SPW0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC31.04■■■□□ 2.56
Vps54Q5SPW0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Vps54Q5SPW0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC31.04■■■□□ 2.56
Vps54Q5SPW0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC31.04■■■□□ 2.56
Vps54Q5SPW0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Vps54Q5SPW0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Vps54Q5SPW0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.03■■■□□ 2.56
Vps54Q5SPW0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
Vps54Q5SPW0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Vps54Q5SPW0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
Vps54Q5SPW0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Vps54Q5SPW0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC31■■■□□ 2.55
Vps54Q5SPW0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
Vps54Q5SPW0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Vps54Q5SPW0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Vps54Q5SPW0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 76.5 ms