Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
Trim63Q38HM4 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.54■■□□□ 1.04
Trim63Q38HM4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim63Q38HM4 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim63Q38HM4 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim63Q38HM4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.52■■□□□ 1.04
Trim63Q38HM4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Trim63Q38HM4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim63Q38HM4 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim63Q38HM4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim63Q38HM4 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim63Q38HM4 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim63Q38HM4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trim63Q38HM4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Trim63Q38HM4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.46■■□□□ 1.03
Trim63Q38HM4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim63Q38HM4 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trim63Q38HM4 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.43■■□□□ 1.02
Trim63Q38HM4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim63Q38HM4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim63Q38HM4 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.4■■□□□ 1.02
Trim63Q38HM4 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trim63Q38HM4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trim63Q38HM4 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim63Q38HM4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim63Q38HM4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trim63Q38HM4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim63Q38HM4 Gm15045-201ENSMUST00000117359 883 ntBASIC21.36■■□□□ 1.01
Trim63Q38HM4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim63Q38HM4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
Trim63Q38HM4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trim63Q38HM4 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim63Q38HM4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim63Q38HM4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim63Q38HM4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim63Q38HM4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.32■■□□□ 1
Trim63Q38HM4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim63Q38HM4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim63Q38HM4 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.29■■□□□ 1
Trim63Q38HM4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim63Q38HM4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim63Q38HM4 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Trim63Q38HM4 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim63Q38HM4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim63Q38HM4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim63Q38HM4 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim63Q38HM4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim63Q38HM4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim63Q38HM4 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.24■□□□□ 0.99
Trim63Q38HM4 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim63Q38HM4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim63Q38HM4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim63Q38HM4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
Trim63Q38HM4 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim63Q38HM4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim63Q38HM4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim63Q38HM4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Trim63Q38HM4 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim63Q38HM4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim63Q38HM4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim63Q38HM4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim63Q38HM4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim63Q38HM4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim63Q38HM4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim63Q38HM4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim63Q38HM4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim63Q38HM4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim63Q38HM4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim63Q38HM4 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Trim63Q38HM4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
Trim63Q38HM4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim63Q38HM4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim63Q38HM4 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim63Q38HM4 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim63Q38HM4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Trim63Q38HM4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
Trim63Q38HM4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Trim63Q38HM4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Trim63Q38HM4 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Trim63Q38HM4 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim63Q38HM4 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim63Q38HM4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim63Q38HM4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim63Q38HM4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.03■□□□□ 0.96
Trim63Q38HM4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim63Q38HM4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim63Q38HM4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim63Q38HM4 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim63Q38HM4 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim63Q38HM4 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Trim63Q38HM4 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim63Q38HM4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim63Q38HM4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim63Q38HM4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim63Q38HM4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim63Q38HM4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim63Q38HM4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim63Q38HM4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim63Q38HM4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim63Q38HM4 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms