Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 EBPL-203ENST00000378270 579 ntTSL 2 BASIC22.23■■□□□ 1.15
CX3CL1P78423 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CX3CL1P78423 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.22■■□□□ 1.15
CX3CL1P78423 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CX3CL1P78423 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CX3CL1P78423 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CX3CL1P78423 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CX3CL1P78423 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.18■■□□□ 1.14
CX3CL1P78423 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CX3CL1P78423 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CX3CL1P78423 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CX3CL1P78423 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CX3CL1P78423 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
CX3CL1P78423 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CX3CL1P78423 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.16■■□□□ 1.14
CX3CL1P78423 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
CX3CL1P78423 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.13■■□□□ 1.13
CX3CL1P78423 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC22.13■■□□□ 1.13
CX3CL1P78423 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CX3CL1P78423 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC22.12■■□□□ 1.13
CX3CL1P78423 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CX3CL1P78423 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CX3CL1P78423 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CX3CL1P78423 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC22.09■■□□□ 1.13
CX3CL1P78423 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CX3CL1P78423 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.08■■□□□ 1.12
CX3CL1P78423 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CX3CL1P78423 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
CX3CL1P78423 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.06■■□□□ 1.12
CX3CL1P78423 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.06■■□□□ 1.12
CX3CL1P78423 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.06■■□□□ 1.12
CX3CL1P78423 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CX3CL1P78423 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CX3CL1P78423 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CX3CL1P78423 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CX3CL1P78423 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.03■■□□□ 1.12
CX3CL1P78423 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
CX3CL1P78423 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CX3CL1P78423 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CX3CL1P78423 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CX3CL1P78423 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CX3CL1P78423 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC22■■□□□ 1.11
CX3CL1P78423 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CX3CL1P78423 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC22■■□□□ 1.11
CX3CL1P78423 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CX3CL1P78423 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.99■■□□□ 1.11
CX3CL1P78423 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.99■■□□□ 1.11
CX3CL1P78423 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CX3CL1P78423 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CX3CL1P78423 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CX3CL1P78423 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CX3CL1P78423 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.96■■□□□ 1.11
CX3CL1P78423 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CX3CL1P78423 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CX3CL1P78423 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CX3CL1P78423 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.94■■□□□ 1.1
CX3CL1P78423 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.94■■□□□ 1.1
CX3CL1P78423 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
CX3CL1P78423 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.92■■□□□ 1.1
CX3CL1P78423 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CX3CL1P78423 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.92■■□□□ 1.1
CX3CL1P78423 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CX3CL1P78423 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CX3CL1P78423 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CX3CL1P78423 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.9■■□□□ 1.1
CX3CL1P78423 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.9■■□□□ 1.1
CX3CL1P78423 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.88■■□□□ 1.09
CX3CL1P78423 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CX3CL1P78423 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CX3CL1P78423 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CX3CL1P78423 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.84■■□□□ 1.09
CX3CL1P78423 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CX3CL1P78423 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.83■■□□□ 1.09
CX3CL1P78423 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.82■■□□□ 1.08
CX3CL1P78423 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CX3CL1P78423 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.81■■□□□ 1.08
CX3CL1P78423 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CX3CL1P78423 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CX3CL1P78423 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.8■■□□□ 1.08
CX3CL1P78423 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.8■■□□□ 1.08
CX3CL1P78423 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CX3CL1P78423 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CX3CL1P78423 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CX3CL1P78423 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CX3CL1P78423 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CX3CL1P78423 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.78■■□□□ 1.08
CX3CL1P78423 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CX3CL1P78423 AC120057.4-201ENST00000624722 1615 ntBASIC21.77■■□□□ 1.07
CX3CL1P78423 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CX3CL1P78423 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CX3CL1P78423 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.76■■□□□ 1.07
CX3CL1P78423 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CX3CL1P78423 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.75■■□□□ 1.07
CX3CL1P78423 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CX3CL1P78423 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CX3CL1P78423 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CX3CL1P78423 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CX3CL1P78423 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CX3CL1P78423 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CX3CL1P78423 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms