Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.56■■■□□ 2.64
GGPS1O95749 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
GGPS1O95749 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.54■■■□□ 2.64
GGPS1O95749 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.54■■■□□ 2.64
GGPS1O95749 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
GGPS1O95749 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
GGPS1O95749 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
GGPS1O95749 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.53■■■□□ 2.64
GGPS1O95749 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
GGPS1O95749 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
GGPS1O95749 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
GGPS1O95749 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
GGPS1O95749 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
GGPS1O95749 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.48■■■□□ 2.63
GGPS1O95749 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
GGPS1O95749 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.46■■■□□ 2.63
GGPS1O95749 AL133380.1-201ENST00000506013 324 ntBASIC31.46■■■□□ 2.63
GGPS1O95749 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.46■■■□□ 2.63
GGPS1O95749 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
GGPS1O95749 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.45■■■□□ 2.63
GGPS1O95749 CAHM-201ENST00000604200 896 ntBASIC31.45■■■□□ 2.63
GGPS1O95749 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
GGPS1O95749 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
GGPS1O95749 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
GGPS1O95749 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
GGPS1O95749 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
GGPS1O95749 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.34■■■□□ 2.61
GGPS1O95749 AL391121.1-201ENST00000607967 1349 ntBASIC31.33■■■□□ 2.61
GGPS1O95749 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
GGPS1O95749 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
GGPS1O95749 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.29■■■□□ 2.6
GGPS1O95749 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
GGPS1O95749 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.27■■■□□ 2.6
GGPS1O95749 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
GGPS1O95749 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
GGPS1O95749 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.23■■■□□ 2.59
GGPS1O95749 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.21■■■□□ 2.59
GGPS1O95749 RPS2P35-201ENST00000443417 897 ntBASIC31.21■■■□□ 2.59
GGPS1O95749 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
GGPS1O95749 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
GGPS1O95749 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
GGPS1O95749 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
GGPS1O95749 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
GGPS1O95749 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
GGPS1O95749 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.14■■■□□ 2.58
GGPS1O95749 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
GGPS1O95749 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
GGPS1O95749 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.09■■■□□ 2.57
GGPS1O95749 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
GGPS1O95749 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
GGPS1O95749 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
GGPS1O95749 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
GGPS1O95749 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
GGPS1O95749 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.05■■■□□ 2.56
GGPS1O95749 AL162393.1-201ENST00000437852 946 ntBASIC31.05■■■□□ 2.56
GGPS1O95749 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.05■■■□□ 2.56
GGPS1O95749 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
GGPS1O95749 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.03■■■□□ 2.56
GGPS1O95749 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
GGPS1O95749 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.02■■■□□ 2.56
GGPS1O95749 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.02■■■□□ 2.56
GGPS1O95749 AP006261.1-201ENST00000584783 668 ntBASIC31.02■■■□□ 2.56
GGPS1O95749 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.01■■■□□ 2.55
GGPS1O95749 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
GGPS1O95749 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31■■■□□ 2.55
GGPS1O95749 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31■■■□□ 2.55
GGPS1O95749 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
GGPS1O95749 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
GGPS1O95749 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
GGPS1O95749 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.98■■■□□ 2.55
GGPS1O95749 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
GGPS1O95749 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.96■■■□□ 2.55
GGPS1O95749 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
GGPS1O95749 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
GGPS1O95749 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
GGPS1O95749 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.9■■■□□ 2.54
GGPS1O95749 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.9■■■□□ 2.54
GGPS1O95749 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
GGPS1O95749 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
GGPS1O95749 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
GGPS1O95749 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
GGPS1O95749 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
GGPS1O95749 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
GGPS1O95749 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
GGPS1O95749 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
GGPS1O95749 WASH5P-204ENST00000632292 975 ntBASIC30.86■■■□□ 2.53
GGPS1O95749 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
GGPS1O95749 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.85■■■□□ 2.53
GGPS1O95749 MIR762-201ENST00000390236 83 ntBASIC30.84■■■□□ 2.53
GGPS1O95749 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.84■■■□□ 2.53
GGPS1O95749 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.83■■■□□ 2.53
GGPS1O95749 MIR3665-201ENST00000578708 105 ntBASIC30.83■■■□□ 2.53
GGPS1O95749 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.82■■■□□ 2.52
GGPS1O95749 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
GGPS1O95749 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
GGPS1O95749 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
GGPS1O95749 DUX4L28-201ENST00000623687 678 ntBASIC30.78■■■□□ 2.52
GGPS1O95749 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
GGPS1O95749 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
GGPS1O95749 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms