Protein–RNA interactions for Protein: O60832

DKC1, H/ACA ribonucleoprotein complex subunit 4, humanhuman

Known RBP eCLIP

Length 514 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKC1O60832 TIPIN-203ENST00000562124 1009 ntAPPRIS ALT2 TSL 517.98■□□□□ 0.471e-323■■■■■ 122.3
DKC1O60832 TIPIN-201ENST00000261881 1744 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.441e-323■■■■■ 122.3
DKC1O60832 TIPIN-204ENST00000566524 1459 ntTSL 28.53□□□□□ -1.041e-323■■■■■ 122.3
DKC1O60832 SCARNA14-201ENST00000516903 136 ntBASIC4.23□□□□□ -1.731e-323■■■■■ 122.3
DKC1O60832 SLC5A9-204ENST00000441260 1046 ntTSL 218.12■□□□□ 0.491e-8■■■■■ 122.1
DKC1O60832 SLC5A9-202ENST00000425816 1950 ntTSL 1 (best)16.9■□□□□ 0.31e-8■■■■■ 122.1
DKC1O60832 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.041e-8■■■■■ 122.1
DKC1O60832 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.271e-8■■■■■ 122.1
DKC1O60832 SLC5A9-206ENST00000493837 3769 ntTSL 211.33□□□□□ -0.61e-8■■■■■ 122.1
DKC1O60832 SLC5A9-201ENST00000236495 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.681e-8■■■■■ 122.1
DKC1O60832 snoU2_19.4-201ENST00000364329 80 ntBASIC0.27□□□□□ -2.371e-323■■■■■ 122
DKC1O60832 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.412e-7■■■■■ 121.9
DKC1O60832 NPEPL1-209ENST00000533788 899 ntTSL 518■□□□□ 0.472e-7■■■■■ 121.9
DKC1O60832 NPEPL1-207ENST00000529976 4684 ntTSL 1 (best)17.85■□□□□ 0.452e-7■■■■■ 121.9
DKC1O60832 NPEPL1-206ENST00000527587 4633 ntTSL 516.95■□□□□ 0.32e-7■■■■■ 121.9
DKC1O60832 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.13■□□□□ 0.819e-8■■■■■ 119.9
DKC1O60832 RAB3GAP2-201ENST00000237724 821 ntTSL 317.13■□□□□ 0.331e-66■■■■■ 119.7
DKC1O60832 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.511e-66■■■■■ 119.7
DKC1O60832 RAB3GAP2-207ENST00000478976 575 ntTSL 411.19□□□□□ -0.621e-66■■■■■ 119.7
DKC1O60832 SNORA36B-201ENST00000410438 131 ntBASIC0.85□□□□□ -2.271e-66■■■■■ 119.7
DKC1O60832 CLASP1-212ENST00000480007 569 ntTSL 49.93□□□□□ -0.823e-8■■■■■ 119.7
DKC1O60832 CLASP1-207ENST00000452274 3966 ntTSL 59.89□□□□□ -0.833e-8■■■■■ 119.7
DKC1O60832 CLASP1-211ENST00000474065 516 ntTSL 38.57□□□□□ -1.043e-8■■■■■ 119.7
DKC1O60832 CLASP1-205ENST00000430234 582 ntTSL 47.74□□□□□ -1.173e-8■■■■■ 119.7
DKC1O60832 CLASP1-206ENST00000449975 555 ntTSL 46.13□□□□□ -1.433e-8■■■■■ 119.7
DKC1O60832 CLASP1-204ENST00000418989 663 ntTSL 46.11□□□□□ -1.433e-8■■■■■ 119.7
DKC1O60832 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.658e-7■■■■■ 119.6
DKC1O60832 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.32■□□□□ 0.528e-7■■■■■ 119.6
DKC1O60832 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.15■□□□□ 0.58e-7■■■■■ 119.6
DKC1O60832 RNASET2-205ENST00000467705 524 ntTSL 511.21□□□□□ -0.612e-7■■■■■ 119.5
DKC1O60832 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.072e-26■■■■■ 118
DKC1O60832 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.062e-26■■■■■ 118
DKC1O60832 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.052e-26■■■■■ 118
DKC1O60832 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.072e-26■■■■■ 118
DKC1O60832 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.24■□□□□ 0.351e-7■■■■■ 118
DKC1O60832 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.25□□□□□ -0.131e-7■■■■■ 118
DKC1O60832 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC12.11□□□□□ -0.471e-7■■■■■ 118
DKC1O60832 PUM1-219ENST00000527498 652 ntTSL 33.95□□□□□ -1.785e-26■■■■■ 115.9
DKC1O60832 SNORA81-201ENST00000408493 178 ntBASIC7.16□□□□□ -1.261e-323■■■■■ 115.1
DKC1O60832 STXBP2-210ENST00000595950 552 ntTSL 525.32■■□□□ 1.642e-7■■■■■ 114.9
DKC1O60832 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.17■□□□□ 0.982e-7■■■■■ 114.9
DKC1O60832 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.912e-7■■■■■ 114.9
DKC1O60832 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.862e-7■■■■■ 114.9
DKC1O60832 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.45■□□□□ 0.542e-7■■■■■ 114.9
DKC1O60832 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 517.46■□□□□ 0.392e-7■■■■■ 114.9
DKC1O60832 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)16.97■□□□□ 0.312e-7■■■■■ 114.9
DKC1O60832 STXBP2-217ENST00000599737 1523 ntTSL 516.46■□□□□ 0.232e-7■■■■■ 114.9
DKC1O60832 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.122e-7■■■■■ 114.9
DKC1O60832 STXBP2-204ENST00000593535 549 ntTSL 414.53□□□□□ -0.082e-7■■■■■ 114.9
DKC1O60832 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.242e-50■■■■■ 114.8
DKC1O60832 TBC1D13-201ENST00000223865 3378 ntTSL 2 BASIC10.26□□□□□ -0.772e-50■■■■■ 114.8
DKC1O60832 SCARNA17-201ENST00000516183 144 ntBASIC-0.87□□□□□ -2.551e-323■■■■■ 114.3
DKC1O60832 MIR1248-201ENST00000629190 106 ntBASIC2.26□□□□□ -2.051e-323■■■■■ 113.5
DKC1O60832 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.272e-8■■■■■ 112.5
DKC1O60832 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.22e-8■■■■■ 112.5
DKC1O60832 SLC17A9-207ENST00000488738 3992 ntTSL 213.74□□□□□ -0.212e-8■■■■■ 112.5
DKC1O60832 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC9.36□□□□□ -0.915e-7■■■■■ 112.2
DKC1O60832 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.74■■□□□ 1.234e-37■■■■■ 112
DKC1O60832 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.53■□□□□ 0.884e-37■■■■■ 112
DKC1O60832 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.83■□□□□ 0.774e-37■■■■■ 112
DKC1O60832 ASGR1-207ENST00000574330 887 ntTSL 518.23■□□□□ 0.514e-37■■■■■ 112
DKC1O60832 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.194e-37■■■■■ 112
DKC1O60832 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.42■□□□□ 0.064e-37■■■■■ 112
DKC1O60832 ASGR1-203ENST00000570576 627 ntTSL 514.75□□□□□ -0.054e-37■■■■■ 112
DKC1O60832 MIR3177-201ENST00000578255 82 ntBASIC13.84□□□□□ -0.195e-25■■■■■ 111.6
DKC1O60832 EIF4A2-213ENST00000465792 734 ntTSL 23.44□□□□□ -1.864e-7■■■■■ 111.1
DKC1O60832 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.451e-7■■■■■ 110.6
DKC1O60832 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.591e-7■■■■■ 110.6
DKC1O60832 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC11.56□□□□□ -0.565e-7■■■■■ 110.1
DKC1O60832 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC10.2□□□□□ -0.785e-7■■■■■ 110.1
DKC1O60832 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.785e-7■■■■■ 110.1
DKC1O60832 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC9.91□□□□□ -0.825e-7■■■■■ 110.1
DKC1O60832 RERE-213ENST00000480342 2710 ntTSL 210.4□□□□□ -0.747e-7■■■■■ 108.8
DKC1O60832 AGRN-202ENST00000419249 861 ntTSL 320.63■□□□□ 0.895e-11■■■■■ 107.8
DKC1O60832 AGRN-203ENST00000461111 3385 ntTSL 1 (best)13.1□□□□□ -0.315e-11■■■■■ 107.8
DKC1O60832 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.57■■□□□ 1.044e-47■■■■■ 107.3
DKC1O60832 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.984e-47■■■■■ 107.3
DKC1O60832 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.414e-47■■■■■ 107.3
DKC1O60832 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.55■□□□□ 0.084e-47■■■■■ 107.3
DKC1O60832 RREB1-208ENST00000483150 2833 ntTSL 1 (best)13.23□□□□□ -0.294e-47■■■■■ 107.3
DKC1O60832 RREB1-207ENST00000475946 9067 ntTSL 1 (best)9.26□□□□□ -0.934e-47■■■■■ 107.3
DKC1O60832 LPCAT1-203ENST00000503252 2694 ntTSL 220.08■□□□□ 0.81e-7■■■■■ 107.2
DKC1O60832 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.8■■□□□ 1.082e-11■■■■■ 107.1
DKC1O60832 LINC00511-202ENST00000457958 1696 ntTSL 1 (best) BASIC13.84□□□□□ -0.192e-11■■■■■ 107.1
DKC1O60832 LINC00511-214ENST00000581801 379 ntTSL 312.29□□□□□ -0.442e-11■■■■■ 107.1
DKC1O60832 LINC00511-210ENST00000580861 467 ntTSL 49.93□□□□□ -0.822e-11■■■■■ 107.1
DKC1O60832 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.638e-17■■■■■ 106.4
DKC1O60832 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.99■□□□□ 0.638e-17■■■■■ 106.4
DKC1O60832 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.74■□□□□ 0.438e-17■■■■■ 106.4
DKC1O60832 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.358e-17■■■■■ 106.4
DKC1O60832 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.13■□□□□ 0.338e-17■■■■■ 106.4
DKC1O60832 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.158e-17■■■■■ 106.4
DKC1O60832 ELOF1-207ENST00000591674 679 ntTSL 2 BASIC9.59□□□□□ -0.878e-17■■■■■ 106.4
DKC1O60832 RBMS2-207ENST00000552247 1471 ntTSL 5 BASIC10.52□□□□□ -0.735e-10■■■■■ 105.4
DKC1O60832 RBMS2-204ENST00000550726 1452 ntTSL 2 BASIC9.59□□□□□ -0.875e-10■■■■■ 105.4
DKC1O60832 RBMS2-208ENST00000552916 1633 ntTSL 1 (best)8.71□□□□□ -1.025e-10■■■■■ 105.4
DKC1O60832 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC7.3□□□□□ -1.245e-10■■■■■ 105.4
DKC1O60832 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.35e-10■■■■■ 105.4
DKC1O60832 RBMS2-205ENST00000551369 552 ntTSL 45.91□□□□□ -1.465e-10■■■■■ 105.4
DKC1O60832 RBMS2-203ENST00000549945 531 ntTSL 54.74□□□□□ -1.655e-10■■■■■ 105.4
Retrieved 100 of 8,567 protein–RNA pairs in 38.6 ms