Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Gm25262-201ENSMUST00000174934 133 ntBASIC30.98■■■□□ 2.55
Smarce1O54941 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
Smarce1O54941 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Smarce1O54941 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Smarce1O54941 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30.95■■■□□ 2.55
Smarce1O54941 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.95■■■□□ 2.55
Smarce1O54941 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Smarce1O54941 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Smarce1O54941 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Smarce1O54941 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Smarce1O54941 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
Smarce1O54941 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Smarce1O54941 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.85■■■□□ 2.53
Smarce1O54941 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
Smarce1O54941 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
Smarce1O54941 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Smarce1O54941 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smarce1O54941 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smarce1O54941 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smarce1O54941 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Smarce1O54941 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Smarce1O54941 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Smarce1O54941 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Smarce1O54941 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.68■■■□□ 2.5
Smarce1O54941 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Smarce1O54941 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.66■■■□□ 2.5
Smarce1O54941 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.66■■■□□ 2.5
Smarce1O54941 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Smarce1O54941 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Smarce1O54941 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Smarce1O54941 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Smarce1O54941 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
Smarce1O54941 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
Smarce1O54941 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Smarce1O54941 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
Smarce1O54941 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Smarce1O54941 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Smarce1O54941 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Smarce1O54941 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Smarce1O54941 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Smarce1O54941 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
Smarce1O54941 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Smarce1O54941 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.54■■■□□ 2.48
Smarce1O54941 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Smarce1O54941 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Smarce1O54941 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Smarce1O54941 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Smarce1O54941 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Smarce1O54941 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Smarce1O54941 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.48■■■□□ 2.47
Smarce1O54941 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.48■■■□□ 2.47
Smarce1O54941 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Smarce1O54941 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
Smarce1O54941 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.45■■■□□ 2.47
Smarce1O54941 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Smarce1O54941 Gm9905-201ENSMUST00000065740 1845 ntBASIC30.45■■■□□ 2.46
Smarce1O54941 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Smarce1O54941 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Smarce1O54941 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Smarce1O54941 Gm27322-201ENSMUST00000184007 104 ntBASIC30.42■■■□□ 2.46
Smarce1O54941 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
Smarce1O54941 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Smarce1O54941 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.38■■■□□ 2.45
Smarce1O54941 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Smarce1O54941 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Smarce1O54941 Zxda-201ENSMUST00000117281 2621 ntBASIC30.36■■■□□ 2.45
Smarce1O54941 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Smarce1O54941 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
Smarce1O54941 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
Smarce1O54941 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.3■■■□□ 2.44
Smarce1O54941 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Smarce1O54941 Gm6206-201ENSMUST00000133472 2199 ntBASIC30.3■■■□□ 2.44
Smarce1O54941 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Smarce1O54941 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Smarce1O54941 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Smarce1O54941 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
Smarce1O54941 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Smarce1O54941 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Smarce1O54941 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
Smarce1O54941 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Smarce1O54941 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Smarce1O54941 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
Smarce1O54941 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Smarce1O54941 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Smarce1O54941 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
Smarce1O54941 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Smarce1O54941 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
Smarce1O54941 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.18■■■□□ 2.42
Smarce1O54941 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
Smarce1O54941 Gm43445-201ENSMUST00000198564 2091 ntBASIC30.16■■■□□ 2.42
Smarce1O54941 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Smarce1O54941 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Smarce1O54941 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Smarce1O54941 Gm6345-201ENSMUST00000180378 1691 ntBASIC30.11■■■□□ 2.41
Smarce1O54941 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30.08■■■□□ 2.41
Smarce1O54941 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Smarce1O54941 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Smarce1O54941 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Smarce1O54941 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC30.07■■■□□ 2.4
Smarce1O54941 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms