Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv3A0A0A6YYE2 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv3A0A0A6YYE2 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv3A0A0A6YYE2 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trbv3A0A0A6YYE2 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv3A0A0A6YYE2 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv3A0A0A6YYE2 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.11■□□□□ 0.81
Trbv3A0A0A6YYE2 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.1■□□□□ 0.81
Trbv3A0A0A6YYE2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv3A0A0A6YYE2 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trbv3A0A0A6YYE2 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
Trbv3A0A0A6YYE2 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv3A0A0A6YYE2 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trbv3A0A0A6YYE2 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv3A0A0A6YYE2 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trbv3A0A0A6YYE2 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trbv3A0A0A6YYE2 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
Trbv3A0A0A6YYE2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.04■□□□□ 0.8
Trbv3A0A0A6YYE2 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv3A0A0A6YYE2 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv3A0A0A6YYE2 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Trbv3A0A0A6YYE2 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trbv3A0A0A6YYE2 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv3A0A0A6YYE2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv3A0A0A6YYE2 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trbv3A0A0A6YYE2 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trbv3A0A0A6YYE2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
Trbv3A0A0A6YYE2 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trbv3A0A0A6YYE2 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trbv3A0A0A6YYE2 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trbv3A0A0A6YYE2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv3A0A0A6YYE2 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trbv3A0A0A6YYE2 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trbv3A0A0A6YYE2 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trbv3A0A0A6YYE2 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv3A0A0A6YYE2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trbv3A0A0A6YYE2 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv3A0A0A6YYE2 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trbv3A0A0A6YYE2 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trbv3A0A0A6YYE2 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Trbv3A0A0A6YYE2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC19.84■□□□□ 0.77
Trbv3A0A0A6YYE2 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trbv3A0A0A6YYE2 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
Trbv3A0A0A6YYE2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trbv3A0A0A6YYE2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trbv3A0A0A6YYE2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trbv3A0A0A6YYE2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
Trbv3A0A0A6YYE2 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Trbv3A0A0A6YYE2 Amer2-203ENSMUST00000225247 2662 ntBASIC19.8■□□□□ 0.76
Trbv3A0A0A6YYE2 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.79■□□□□ 0.76
Trbv3A0A0A6YYE2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trbv3A0A0A6YYE2 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trbv3A0A0A6YYE2 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trbv3A0A0A6YYE2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Trbv3A0A0A6YYE2 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trbv3A0A0A6YYE2 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Trbv3A0A0A6YYE2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.75■□□□□ 0.75
Trbv3A0A0A6YYE2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trbv3A0A0A6YYE2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trbv3A0A0A6YYE2 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trbv3A0A0A6YYE2 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trbv3A0A0A6YYE2 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Trbv3A0A0A6YYE2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.69■□□□□ 0.74
Trbv3A0A0A6YYE2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Trbv3A0A0A6YYE2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC19.68■□□□□ 0.74
Trbv3A0A0A6YYE2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trbv3A0A0A6YYE2 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trbv3A0A0A6YYE2 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trbv3A0A0A6YYE2 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trbv3A0A0A6YYE2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trbv3A0A0A6YYE2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Trbv3A0A0A6YYE2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.64■□□□□ 0.73
Trbv3A0A0A6YYE2 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trbv3A0A0A6YYE2 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trbv3A0A0A6YYE2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trbv3A0A0A6YYE2 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.63■□□□□ 0.73
Trbv3A0A0A6YYE2 Gm25238-201ENSMUST00000174914 89 ntBASIC19.62■□□□□ 0.73
Trbv3A0A0A6YYE2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trbv3A0A0A6YYE2 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.62■□□□□ 0.73
Trbv3A0A0A6YYE2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Mipep-204ENSMUST00000225043 1548 ntBASIC19.61■□□□□ 0.73
Trbv3A0A0A6YYE2 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv3A0A0A6YYE2 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv3A0A0A6YYE2 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trbv3A0A0A6YYE2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv3A0A0A6YYE2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC19.55■□□□□ 0.72
Trbv3A0A0A6YYE2 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trbv3A0A0A6YYE2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trbv3A0A0A6YYE2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trbv3A0A0A6YYE2 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
Trbv3A0A0A6YYE2 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv3A0A0A6YYE2 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv3A0A0A6YYE2 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv3A0A0A6YYE2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv3A0A0A6YYE2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trbv3A0A0A6YYE2 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms