Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CLDN16Q9Y5I7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN16Q9Y5I7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN16Q9Y5I7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN16Q9Y5I7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN16Q9Y5I7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 AC144652.1-201ENST00000609974 1624 ntBASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN16Q9Y5I7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 AC099791.2-201ENST00000605725 427 ntBASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN16Q9Y5I7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.02■□□□□ 0.95
CLDN16Q9Y5I7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
CLDN16Q9Y5I7 ANOS2P-203ENST00000472227 1816 ntBASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 AC006455.2-201ENST00000429931 906 ntBASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CLDN16Q9Y5I7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 AC092068.2-201ENST00000590491 1708 ntBASIC21■□□□□ 0.95
CLDN16Q9Y5I7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN16Q9Y5I7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 FP325331.1-202ENST00000623531 1380 ntBASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 AC241377.3-202ENST00000626088 1088 ntBASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 AC241585.3-202ENST00000628937 1088 ntBASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 AC245100.8-202ENST00000629247 1058 ntBASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN16Q9Y5I7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 AC110285.6-201ENST00000617652 491 ntBASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLDN16Q9Y5I7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 DUX4L4-201ENST00000566884 1269 ntBASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLDN16Q9Y5I7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLDN16Q9Y5I7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms