Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm15039-201ENSMUST00000118914 875 ntBASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vps28Q9D1C8 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vps28Q9D1C8 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Vps28Q9D1C8 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Vps28Q9D1C8 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Vps28Q9D1C8 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.58■□□□□ 0.89
Vps28Q9D1C8 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
Vps28Q9D1C8 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps28Q9D1C8 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vps28Q9D1C8 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps28Q9D1C8 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vps28Q9D1C8 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Vps28Q9D1C8 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps28Q9D1C8 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vps28Q9D1C8 Gm45417-201ENSMUST00000209533 758 ntBASIC20.55■□□□□ 0.88
Vps28Q9D1C8 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.55■□□□□ 0.88
Vps28Q9D1C8 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Vps28Q9D1C8 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.55■□□□□ 0.88
Vps28Q9D1C8 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Vps28Q9D1C8 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vps28Q9D1C8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Vps28Q9D1C8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Vps28Q9D1C8 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Vps28Q9D1C8 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Vps28Q9D1C8 Gm43137-201ENSMUST00000198052 594 ntBASIC20.53■□□□□ 0.88
Vps28Q9D1C8 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vps28Q9D1C8 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.53■□□□□ 0.88
Vps28Q9D1C8 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vps28Q9D1C8 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Vps28Q9D1C8 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps28Q9D1C8 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps28Q9D1C8 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Vps28Q9D1C8 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms