Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Cdk5rap3Q99LM2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdk5rap3Q99LM2 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdk5rap3Q99LM2 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.83■□□□□ 0.93
Cdk5rap3Q99LM2 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdk5rap3Q99LM2 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdk5rap3Q99LM2 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.83■□□□□ 0.93
Cdk5rap3Q99LM2 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.83■□□□□ 0.93
Cdk5rap3Q99LM2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cdk5rap3Q99LM2 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cdk5rap3Q99LM2 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdk5rap3Q99LM2 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.81■□□□□ 0.92
Cdk5rap3Q99LM2 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Cdk5rap3Q99LM2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdk5rap3Q99LM2 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cdk5rap3Q99LM2 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cdk5rap3Q99LM2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdk5rap3Q99LM2 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdk5rap3Q99LM2 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdk5rap3Q99LM2 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdk5rap3Q99LM2 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Cdk5rap3Q99LM2 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cdk5rap3Q99LM2 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cdk5rap3Q99LM2 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Golph3-202ENSMUST00000226517 2359 ntBASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdk5rap3Q99LM2 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cdk5rap3Q99LM2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Cdk5rap3Q99LM2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdk5rap3Q99LM2 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms