Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rtl3Q6P1Y1 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Rtl3Q6P1Y1 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Rtl3Q6P1Y1 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Rtl3Q6P1Y1 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Rtl3Q6P1Y1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rtl3Q6P1Y1 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Rtl3Q6P1Y1 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Rtl3Q6P1Y1 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.73■□□□□ 0.91
Rtl3Q6P1Y1 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Rtl3Q6P1Y1 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.72■□□□□ 0.91
Rtl3Q6P1Y1 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Rtl3Q6P1Y1 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.7■□□□□ 0.9
Rtl3Q6P1Y1 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Rtl3Q6P1Y1 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Gm43137-201ENSMUST00000198052 594 ntBASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rtl3Q6P1Y1 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rtl3Q6P1Y1 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rtl3Q6P1Y1 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms